Larimichthys crocea (large yellow croaker): 104925479
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Entry
104925479 CDS
T04659
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104925479 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104925479 (herc4)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104925479 (herc4)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
HECT type E3
104925479 (herc4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
104925479
NCBI-ProteinID:
XP_010737416
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All DBs
Position
III:10864503..10876671
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AA seq
1047 aa
AA seq
DB search
MLCWGNASYGQLGMGGIDEEIVVEPRRCEFFHGKQVCDVGCGHRHTAFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIIMAVSCGASHTLALNDKGQVFSWGLGSDGQLGLNN
FEECVRVPRNIKSLSDVQIAQVACGYWHSHALSRGGQVFSWGQNRYGQLGLGIHGQSIST
PQIIQSLQGIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDSNDRSFPALLKSLR
SQRVIYVSCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIS
CGRQHTLAFSPSSGKMYSFGLGGNGQLGTRSTCNRKSPAPVKGPFIASNNPSDIDSEECC
CVKKIYAGGDQSFAHYVTANKLQNIDDVRLQDPHRIICTLNENIIQKWLNHSPGRLPLEI
SNEIDLVFSSASCLNGSFLSTSHPDHYSTSSKCSGVDMNTARLLFHRVVQQDHPEVTQQI
AASLEKHLIPRLNNSPPDIEALRLYLTLPECPLFSDRNNYVTITIPFAKLLLNMKEAPLK
VLGNWWSTLEPTVFQRLVELYKEVVVYLLQMHKMGIPSVEQRIFTCFLDTSLRLLEILHM
VSERAGHIIQYDKFYIHELDDLIDIRNDYVTWIQRQMYPMGHDGGVTLCRYPFVFDAQAK
TTLLQTDAVIQMQMAVDQAQMQNFSSMFMPAVESVNPCLILIVRRENIVGDTMEVLRKSK
NVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFE
DIDLFNLIGVICGLAIYNITIVELHFPVALYKKLLKRKPTLDDLKELMPDVGRSLQLLLD
YTEDDLEDTFCLNFTITEENYGATEVLELVPNGEDINVNKSNRQDFVNAYVDYVFNTSVA
PLFECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELQKSTEYKGEYWADHPTIR
LFWEVFHSLPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTSGGEHYLPVAHTCFNLLD
LPKYTSIETLREKLLQAIDHNQGFNLA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaatgcctcctacggacagctaggcatgggtgggattgatgaggag
attgtagtcgagccacgaagatgtgaattcttccacgggaagcaagtgtgtgatgtgggg
tgtggccacagacacacagccttcctgctggaggatgggacagtgtacacctgtggctgc
aatgacctcgggcagctgggacatgagaagagcagaaagaaaccagaacaggttgtggct
ctggatgcacagatcatcatggcggtgtcatgcggggcgtcccacacactggccctgaat
gacaaagggcaggttttctcatggggtctgggctcagatgggcagctgggcctcaataac
tttgaagaatgtgttcgtgtgcctcgaaacatcaagagtttgtcagatgtacaaattgct
caggtagcctgtgggtattggcattcacatgcactttcaagagggggccaagtcttctcc
tggggccagaatcggtatggacaactcgggctgggaatacatggacagagcatttccaca
ccccaaatcattcagtctctgcagggcattccttttgctcagatatcagcaggtggtgct
cacagttttgccctcactctctcaggagcagtgtttggttgggggcgcaacaagtttggt
cagctgggtctcaatgacagcaatgatcggtctttcccagccctgctgaagtcccttaga
tcgcagagagtgatttacgtctcctgtggagaagatcacacagcagcattaaccaaggaa
ggaggtgtgtttacatttggagctggtggatacggacaacttggacacaattctacaaac
catgaaatcaaccctaggaaagtgtttgagctcatgggaaacgtagttacacagatttca
tgtggaaggcagcatacgttggctttctcaccctcttctggaaagatgtactcatttggg
cttggtggtaacgggcagctgggtactcgctccacttgcaacagaaaaagccccgcccct
gtcaagggacccttcatagcctccaataatccatcagatatagactcggaggagtgctgt
tgtgtcaagaagatttatgccggaggagaccagagctttgcacactatgtcactgccaat
aagctccagaacatagatgacgtgaggctacaagacccccacagaatcatttgcacctta
aatgagaacatcatacaaaaatggttgaatcactcaccaggaagacttccactagaaatt
tccaatgagattgacctcgtgttctcctcagcaagctgcctcaatggatcttttctgtca
acgagtcatccagatcactacagtaccagcagcaaatgttcaggggtggatatgaacaca
gctcgcctcctgtttcacagagtggtccaacaagatcaccctgaggtcactcagcagatt
gctgccagcctggagaagcacctaattcccagactaaacaactctcctccagacattgaa
gctctgagactctacctcactctgccagaatgccctctcttcagtgaccgaaataattat
gtgaccatcaccatcccgtttgccaaattactactcaacatgaaagaggctccactgaag
gttttaggaaactggtggtctacgttggagcccacagtcttccagcggctggttgaattg
tacaaggaagtggtggtgtatctgcttcagatgcacaagatgggcattccttcagtagag
cagagaattttcacctgttttctggacacatccctcagactcctggagatcctgcacatg
gtgagtgagagagcggggcacatcattcagtatgataaattttacatccatgagttggat
gacctgatagacatcagaaatgactatgtcacgtggattcagaggcaaatgtacccaatg
ggtcatgatggtggggtgactctgtgcaggtatccctttgtatttgatgcccaagcaaag
acgacactgcttcagactgatgctgtcatacagatgcagatggcagtggaccaggcacag
atgcaaaacttcagctccatgttcatgccagcagtggaatctgtcaacccgtgcctcatc
ctcatcgtccggagggaaaatatcgttggagacaccatggaagtcctcaggaagtccaag
aatgttgactacaagaaaccacttaaggtgatttttgtgggagaggaggcagtcgatgcc
ggaggcgtgagaaaggagttcttcctcctgatcatgaaagagttgctggatcccaaatat
gggatgtttcgttactacgaggagtccaggctcatctggttttcaaacaagacctttgag
gacattgacttgttcaacctcatcggagtcatctgtggtctggccatctacaatatcact
atagtggagctccacttccctgtggccctttacaagaagctcctgaagaggaaaccaacg
ctagatgatctgaaagagctaatgccagatgtgggaaggagtctgcagctgttactggac
tacacagaagatgatcttgaagacaccttctgcttgaacttcacaatcacagaggaaaac
tatggtgccacagaggtcttggaactagtacctaacggagaagacatcaatgtcaataaa
tcaaacaggcaggactttgtcaatgcatacgtagactacgtcttcaacacgtcagtggcc
ccactgtttgagtgcttctatgcaggcttccacaaggtgtgcggtggaaaagttcttgag
ctgttccagccaaatgaactgcaagccatggtcattggcaacaccaactacgactggacg
gagctccaaaagagtactgaatacaaaggggagtactgggcggaccatcccaccatcaga
ctcttctgggaggtgtttcacagccttcctttagagaagaaaaaacagtttcttttgttc
ctcacgggaagtgaccgcatacccatcttgggcatgaaaagcctgaagctggtgatccag
cccaccagtggaggggagcattacttaccggtcgcccacacctgcttcaacctgctggac
ctgcccaagtacacgagtatagaaacactccgcgagaagcttctacaggctatagatcac
aatcaaggctttaatcttgcctga
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