Larimichthys crocea (large yellow croaker): 104925535
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Entry
104925535 CDS
T04659
Symbol
nxf1
Name
(RefSeq) nuclear RNA export factor 1 isoform X4
KO
K14284
nuclear RNA export factor
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03008
Ribosome biogenesis in eukaryotes
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
lco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104925535 (nxf1)
03015 mRNA surveillance pathway
104925535 (nxf1)
03008 Ribosome biogenesis in eukaryotes
104925535 (nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
104925535 (nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104925535 (nxf1)
03009 Ribosome biogenesis [BR:
lco03009
]
104925535 (nxf1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104925535 (nxf1)
mRNA cycle factors
Stress granule specific factors
104925535 (nxf1)
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
104925535 (nxf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
LRR_6
DUF3592
Motif
Other DBs
NCBI-GeneID:
104925535
NCBI-ProteinID:
XP_010737483
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All DBs
Position
I:complement(28280946..28291902)
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AA seq
629 aa
AA seq
DB search
MADGGHYYNEHDDRTAPQFRNRKDRGPHKGRSYDRSRRGRQRGGFGGPGPRSRLDDTDGD
VTMSDNSQDNSSQHRYNPYGDRPFRKGGDGRFDKDRRQGKGGGRGGGFRADRGGGGGRGG
VKARSGWYKVTIPHGRKYDKKWLLTALQNICSVTYTPVQYHVDHNRAHFFLDDSSAANAL
HKCSHKITDADGYKVEVHVNPSAPPSFLLSDLKPEHLEHLKQCMAKRFDGSQQALDLNNI
RTDPDLVSQNIEVILNRKTNMEAVIKIIEGNIPELTSLNLSNNRIHKLDELAELVTKVPH
LKTLNLSHNELKSDRELDKLKGLKLVELWLNRNPLCDLFKDQASYISAVRQRFPRLLKLD
GNDLPAPIGFDVETPTTIPPCKGSCFGSDEIKAIILRFLQQYYSIYDSGDRQPLLDAYHD
GASLSLTTPYSTQNPSRSSLGEYHKDSRNLKRLKDSTIRFRLLKHTRLNVVAFLNELPKT
QHDIASFTVDVNTYTNTLLSFTVSGVFKEVAVDGKSRESTMAFSRVFITVPAGNTGLCIV
NDQLFIRMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQ
DNEWDFNRAAQIFTQLKTEGKIPDVAFIK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggcggacattactacaacgagcacgatgacagaactgcaccacagtttcgc
aatcgtaaagacagaggcccccacaagggtcggtcgtatgacaggtcccgcagaggccgc
caacggggaggctttggaggacctggaccgcggtctaggctggatgataccgatggggat
gtaactatgagtgacaactctcaggacaacagctcccagcacagatacaacccatatggt
gatcgaccttttcggaaaggaggagatggacggtttgacaaagaccggcgacaaggcaaa
ggaggcggtagaggaggtggttttagagcagacagaggtggaggaggcggtcgtggagga
gtgaaagcccgatcaggctggtacaaagtaacgataccacatggaagaaaatatgacaag
aaatggttattgacagctcttcagaacatctgttcagttacctacacacctgtacagtac
cacgttgaccataacagggcccatttctttctggatgattcatctgctgccaatgccttg
cacaaatgctctcacaagatcacagatgcagatggttataaggtggaagtgcatgtcaac
cccagtgctccaccatccttcctgctctctgacttgaagcctgaacacttggagcacctg
aagcaatgcatggcaaaacgctttgatggctcccagcaagctctggacctgaacaacatc
cgaacagacccagacctggtgtcccaaaacattgaagtcatcttgaacaggaagacaaac
atggaagctgtcatcaaaatcattgaaggaaacattccagagctgacgagcttaaacctg
agtaacaaccgcattcacaaactggatgagctcgctgaattggttaccaaggtccctcat
ctgaagacactcaacctttcccacaatgagctgaagtcagaccgggagctggacaagttg
aaaggcctgaagttggtggagctgtggctgaacaggaaccctctgtgtgacctcttcaag
gatcaggcctcgtacatcagtgctgtgcggcagaggtttccccggctcctgaaactggat
ggtaatgacctccctgcacccattggattcgatgtggaaacgcccaccactatccctccc
tgcaagggcagctgtttcggctccgacgaaatcaaggccatcatccttcggttcttgcaa
cagtactacagcatatatgactccggggacagacagccactcctggatgcttaccatgat
ggagcatcattatctcttacaacaccttactccacccagaacccctctaggagcagcctc
ggagagtatcacaaagacagtcgaaacctgaagaggctcaaagactccacaatacggttt
cggcttctgaagcacacacgactgaacgttgtggcattccttaacgagttgcccaaaact
cagcacgacatcgcctcctttactgttgatgtaaacacctacaccaacacactactatca
ttcacagtcagtggagtcttcaaagaagttgcagtggatggtaaatctagagagtccacc
atggccttctctcgagttttcatcacagtcccagcaggaaatactggtctgtgcatcgtg
aatgaccaactttttatccggatggccacaacagaggagatccgcagagcctttgttgct
cccgccccaactccatcttccagccctgtccccaccctcactgcaccgcagcaggagatg
ctcacagcgttctcacagaagtctggcatgaacctggaatggtcccagaagtgtctgcaa
gacaatgaatgggatttcaacagagcggcacaaattttcacccagttgaagacggaaggc
aagatcccagacgttgcattcataaaatga
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