Larimichthys crocea (large yellow croaker): 104925868
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Entry
104925868 CDS
T04659
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03015
mRNA surveillance pathway
lco04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104925868 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
104925868 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104925868 (sympk)
03019 Messenger RNA biogenesis [BR:
lco03019
]
104925868 (sympk)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104925868 (sympk)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104925868 (sympk)
U7-dependent histone pre-mRNA processing factors
104925868 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Cnd1
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
104925868
NCBI-ProteinID:
XP_019132166
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All DBs
Position
I:7372918..7384808
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AA seq
1222 aa
AA seq
DB search
MELSPEEGDPDTPHVINMTTSEKVVDLLNQAALIPTDEKLTVLKQVQELIINKDPSLLDN
FLDEMIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILT
LTQLYKVTLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLII
TLSPRTSDSDVPKRQEGDISLDKVPKDHSYIRYDALCEEGKTALERLLKFMVHPAITSIN
LTTALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQGQISTLLLDLGMPQSEITRSTPAPREQRKRPRHEQYTEGKKVKLEPTLIEDDED
KEEPAPLSVPKPAAVPVAQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDAGKEEGNEEDSGTKDQLI
KRKVPALMVGQAISVVGGYTEKTPSTEAAPTAVKRLPEPILPTAQTKMTGASGRKKVFRL
SDVIQPVSDTQIEKLTSKAVKRILHSEKAIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLE
FILDDIRARSDLAFSLLYQEYNTYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTK
LVLEAPVITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKE
KVRTTAMAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEET
VRQCLFLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVE
NCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQA
LPKLIKLNPIVVKEVFNRLLGTQHSEGSSTVSPLTPGDLLISLHNIDSTKCDMKSIIKAT
NLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVK
QVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLQHVHSFTPHQ
QAHIPASIMSVLEADKKPEPKPVEPVVEKEMEAVSTPVEEEAPTAAPQESETSVQQHPAD
IKDDEEPMEHEESNPVIQEETVDAVSQVDLARQGETPSPQPKPAEEPMEASQPEPSDLEE
PEKDVEADVTVPEAGSSSEDVE
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggagctttccccggaggagggggaccctgacactccccatgtcatcaacatgaccacc
agcgagaaggtggtggatcttctgaatcaggctgccctgatacccacagatgaaaagcta
acggtgctcaaacaggtccaggagctcatcatcaataaggatccttctcttctggacaat
ttcctggatgagatgatcgcctttcagactgacaagtctattgaagtgagaaagtttgtc
attggcttcatagaggaagcatgtaaacgggacaacgagctccttctcagactgattgcc
aatctgaacatgctgctgaaggatgaaagcgtgaacgtggtgaagaaagccatcctcaca
ctcacacagctgtacaaagttactctgcagtggttggtacggtctaaagcagtatcagag
cggcaggaggcatgctgggacctggtcacacagatgaaaggcgatgtactggccttgctg
gactctgaaaatgacggcgttcgcactcacgccatcaagttcacagaatcgttaataatc
actctgtcaccgaggacgtcagactccgatgtccccaagcgacaggagggcgacatcagc
ctggacaaagtccccaaagatcactcgtacattcgctacgatgctttgtgtgaagaggga
aagaccgcactagagaggctgctgaagttcatggttcacccggccattacaagcattaac
ctcaccacagcactcggctctttggccacaatcgcccgtcagaggccaatgttcatgtca
gaggtggtgcaggcgtatgagacgttacatgcgaacctgccacccactctggccaagtct
caggtcagcagcgtgcgaaagaacctgaagctgcacttggtggcggtcctcaagcatccc
tgcagcctggagttccagggtcagatcagcactctgctgctcgacctgggaatgccccag
agtgaaataactcgctctacacctgcacctcgcgagcagcgcaaaaggcctcgacatgag
caatacacagaggggaaaaaggtcaagttggagccaaccctgattgaagatgatgaggac
aaagaggagccagcccctctctcggtccctaaaccagctgctgttccagtagctcagtct
gccatcgacctcacagcggagttcctacacccactgcttaaccccgagaacgtagccaac
ctggtgctcatcagcatggtgtatctgcctgatgtcatgccagcatccttccaggccacg
tacacgcctgttgaatcagccggcactgatgcccaaattaaacatctggccaggctgatg
gccacacagatgactgcagctggaattggtccaggacttgagcagtgcaaagccagagaa
gacgatgcaggcaaagaagaaggcaacgaggaggactctggtactaaagaccagctcatc
aaacgcaaagttccagctctgatggtgggacaagcgatctccgtggtgggaggttacacg
gaaaagactccgtccacagaggcggctcccaccgcagtgaagaggcttcctgaacccatc
cttcctacggcacagaccaagatgacgggggcgagcgggaggaaaaaagtgtttcgattg
tcagatgtcatccaacctgtatcagacacccagattgaaaagttaacctccaaagcagtc
aaacgcatcctgcattcagagaaggcgatcgctcaaagcggcatgtcccacgtcagagtg
aagctcctctccagactcgtgacgcagttcgaggggatgatgaaggaagacgtgcttgaa
tttattctggatgacatcagggcgaggagcgacttggctttttctctcctctaccaagag
tacaacacttatctcagccagctgccgtcagggctgctggacagctacgaccactgtctg
tacactctgctgtcgggcctgcaggagaaacccgagcagagggatggacttttcaccaaa
ctggtcctggaggctcccgttataacagaatcggcgttggaagtgattcgacgttactgt
gaggacgagtctcgggtgtatttgggcatgacgactctgaaggagcttatcgtcaaacgg
ccctcgaggcagtttcagtacctgcacgtgcttctggatctcagctcacatgaaaaagag
aaggtgcggaccaccgccatggcttttctcaagcgtatgtatgaaaaagaccagctcagg
gactacattgagaagtttgccttgaactacatgcagcttctggtccaccccaaccctccg
tctctgctctttggggctgacaaggacacagaagtggctgccccctggactgaagagact
gtgagacagtgtctgttcctctatctgtccctgctgcctctaaatcaccggctggtccac
gagctggctgctgtctacaccgaggccatcgctgacatcaagcggagcgtgcttcgagca
atagagcagcctatccgaggaatggggatgaactcacctgagctgctgctcttggttgaa
aactgtcctaaaggagcagagactttagtcactcgctgtctgcacattttgactgacaaa
gtgcctccatctccagagctggtggagagagtcagagacctttaccacaagagagtgccc
gatgttcgcttcctgatccccgtcataaacggcctggaaaagaatgaagtcatccaggct
ctgcccaagctcattaaactcaacccgatcgtagtgaaagaggtcttcaaccgtctcttg
ggcactcagcacagtgagggaagttcaactgtgtcccctctcaccccgggagacctgctg
atctccttacacaacatagactcaaccaaatgtgacatgaagtccatcataaaagctacc
aacctgtgctttggtgagaagaacgtgtacacatcggaggttttggcggtggtgatgcag
cagctgatggagcagagtcctcttcccatgctgctcatgcgtacagtcatccagtcgctc
accatgtatccccggctgggaggcttcgtcatgaacatcctgtcgcgcctcatcgtcaag
caggtgtggaagtatcccaaggtgtgggagggctttgtgaaatgctgccagaggacgaag
cctcagtcgtacagcgttctcctgcagctgccgccggcacagctgaccagcgtgtttgaa
cgctgcccagagatgagagagcctcttctgcagcacgtccactccttcacaccgcatcag
caagctcacataccagcctcaatcatgtcggtcctggaagcagacaaaaagccagaacca
aaacctgtggagcctgtcgtcgagaaagagatggaagcagtttctaccccagttgaagaa
gaggctcccactgcagcaccgcaagagtccgagacgtcagtccagcaacacccagccgac
ataaaagatgacgaagagccaatggaacatgaagagtctaatccagtgatacaggaggaa
actgttgacgctgtttctcaggtggacttggcaagacaaggggagacaccatcacctcaa
ccgaagccagctgaggaaccgatggaggcatctcagcctgaaccttcagacctcgaggag
ccagaaaaagatgttgaagctgatgtcacagtacccgaggccggaagcagcagcgaagac
gtagaatga
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