Larimichthys crocea (large yellow croaker): 104925944
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Entry
104925944 CDS
T04659
Symbol
dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104925944 (dhx34)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104925944 (dhx34)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104925944 (dhx34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
zf-C2H2_DHX34
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
104925944
NCBI-ProteinID:
XP_010737992
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All DBs
Position
VII:complement(24681871..24689727)
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AA seq
1140 aa
AA seq
DB search
MDSDRSRSWDWDSPQCRAQLDEVFFRRHDYIQAGSPEHREFWSFFDRFQRFKTRRDMCGT
GGRTETRDDQRKAVKVDLDLPKEYDARYRINVSVCSRDVEERHRSRQGGSGPGRQEVSAC
RLALLHFLDFTQRQSFGKLAKLRREQKNLPIFQYRDRIVELVRLHPVVVVAGDTGCGKST
QVPQYLLQAGFNNISCTQPRRIACISLAKRVSFESLNQFGSKVGHQIRFETTRTTATKLL
FLTEGLLLRQIQQDRTLAQYQVVIVDEVHERHLHCDFLLGVLRCLVADRPDLRLILMSAT
INIKLFSDYFSSAPVLQVPGRLFPIQVIYQPIPPEEQPSRSEKLDPRPYLRILQGIDQRY
PPEERGDLLLFLSGVAEISTIQEACQIYATHTSRWIVLPLHSTLSLAQQDKVFDIAPPGV
RKCIISTNIAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAG
RTGPGVCYRLYAESDYDAFAPYPVPEIHRVALDSLILQMKSMCLGDPLSFVFIDPPPAAS
IQTAVTYLKEQGALDSRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVEPVLTVAAALS
VQSPFLRSSQHNPDCATARQPLHSNQGDPFTLLNTFNAWVEMKGERGSGSRKWCRRRGLE
EQRLYEMVNLRRQFKELLRSHGLLESEHSASSSGDRGKRRERLTERRKLHQLKRDHEQQE
STKRKVLRLEEGQEGEFSSGSDAEGASKGKKDKEGSGQNMDIQEVKFKLRHNVSELQEAV
SVSQDLSSRQQALLKLVICRGLYPQLALPDEHNSTRKDSEQVFHTKNKQGVVIHPTSVFA
SDPEVLQVPESDVRETGPDRRDSSRHQLLAFVTLLETNKPYLSNCVRVPALQALLLVANT
VDSNADCTRLVVDGWLELELREPEEALKVLSTVLTLRAEWERLLLTQLGHSTMGGPEGQG
VPRKVMEKLSESLVRCLLYTEVSYSLRRLAAFQIQNLYIGPQPESELYQTKPPDLNPLFP
GAEAKPDPIKGGLRVSSFFTYNCLADSRDLYSECLRTFWSCPNCDLYMPLTPLERMQHEA
SCRPAEEQQQQEEESKGVKAGSSSSSSLSRVYHCDVCNEDLTLTSTEILKHKRQHMYSAK
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggactcagaccggagccggagctgggactgggacagcccgcagtgtcgagcccagctg
gacgaggtgtttttccgccggcatgactacatccaggcgggcagcccggagcaccgagag
ttctggtccttctttgaccgcttccagaggttcaagaccaggagggacatgtgcgggaca
ggaggccggaccgagaccagagacgatcagaggaaagctgtgaaggtagatctggacctg
cctaaagagtacgatgctcgctacaggatcaatgtgtccgtgtgcagcagggacgtggag
gagcggcaccggagccggcagggaggctccggcccgggcaggcaggaggtctcagcctgc
cgcctggctctgctgcatttcctggacttcacccagaggcagagctttggaaagctggcc
aagcttcgccgagagcagaagaacctgcccatcttccagtaccgggaccggatagtggag
ctggtgcgacttcaccctgtggtcgtggtggcaggagacacgggctgtgggaaatccacg
caggtgcctcagtatctgcttcaggctggattcaacaacatctcctgcacccagcctcga
cgcatcgcctgcatatccctcgccaagagggtcagctttgagagtctcaaccagttcggc
tcaaaggtggggcaccagatccgcttcgaaaccacccggaccacagccaccaaactcttg
ttcctgaccgaggggctgctgctccgacagatccagcaggacaggacgctggctcagtac
caggtggtgatcgtggacgaggtccacgagagacacctccactgcgacttcctcctcggt
gtcctgcgctgtctggtcgcagaccgcccggaccttcgtctcatcctgatgtcggccacc
atcaacatcaaactcttctctgactatttcagcagcgctcccgtgctgcaggtgccgggc
aggctgttccctatacaggtgatttaccagcctatcccacctgaggagcagccctcacgt
tcagagaaactggaccccagaccgtacctgcgcatcctgcagggcatcgatcagcgttac
cctcccgaggagcgcggcgacctgctgctcttcctcagcggagtcgcggagatctccacc
atccaggaagcctgtcagatttatgccacacacacgagtcgctggatagtcttaccgctg
cacagcaccctctcactggcccagcaggataaggtgttcgacatcgctcctcctggggtg
agaaagtgcatcatctccaccaatatcgctgagacctcggtgacaatagatggcgtgcgc
tttgttgtagactcaggaaaggtgaaggaaatgagtttcgatccaaaggccaagatgcag
cgtctgcaggagttctggatcagccgagccagctccgagcagaggaaaggccgagcaggt
cgcacaggtccgggagtgtgttaccgcctgtacgctgagtctgactacgacgccttcgcg
ccttatcctgtgcctgaaatccacagagtggctctggactctctcattcttcagatgaag
agcatgtgtctcggagatccgctttcttttgtcttcattgatccacctccagctgcgagt
attcagaccgcggttacttacctgaaagagcagggggcactggacagtcgtggtgaactg
acctctattggtagtctgctggcacagctgcctgtggatgtggtcatagggaagatgctg
gtgcttggctctttgtttaacctggtggagcctgtgttgacggtggcagcagccctcagc
gttcagtcgcctttcctgcgcagctcacagcacaaccccgactgtgcgacggcccgccag
cctctgcacagcaaccagggagaccccttcaccctgctcaacaccttcaacgcctgggtg
gagatgaagggagagagagggagcggctcaaggaagtggtgcaggaggagaggcctggag
gagcagcggctctatgagatggtcaacctgcggagacagttcaaggagttgctgaggagc
cacggccttctggagtcagagcacagcgcctcctctagtggtgaccgcggaaagcgcagg
gagaggctaacagagaggaggaagctgcatcagcttaagagagaccacgagcagcaggag
agcaccaagcgtaaagtcctgaggctggaagaaggccaggagggagagttctcctctgga
tcagacgcagagggagcgagcaaaggcaagaaggacaaggagggatcgggacagaacatg
gacatacaggaggtgaagttcaagttgcgtcacaatgtgtcagagctgcaggaggcggtc
agcgtcagtcaggacttgtcctcccgccagcaggctttgctcaagctggtgatctgcaga
ggcctctaccctcagctggcactgcccgacgaacacaactccactcgcaaagactctgag
caggtgtttcacacaaagaataagcagggagtggtgatccatccaaccagcgtgtttgcc
agtgaccccgaggtgttacaggtgcctgaaagtgacgtcagagaaacgggccctgatagg
cgggacagcagcagacaccagctgctagccttcgtcactctgttggagaccaacaagcca
tatttgtccaactgcgtgagagttcctgcactgcaggctctgctgctggtggcgaacacc
gtggacagtaatgctgactgtacgcgtctggtggtggacggctggctggagttggagctg
agggagccagaggaggccctgaaggtgctatccacagttcttactcttagggctgagtgg
gagcgcctcctgttgacccagctgggacatagcacaatgggaggacctgaaggccaaggg
gtgccccgcaaagtcatggagaagctgagtgaaagcctggtccgctgcctgctctacact
gaggtcagttacagcctgcggcgactcgcggcttttcagatccagaacctgtacatcggc
cctcagcccgagtccgagctgtatcagaccaaacctccagatctaaacccgctgtttcca
ggagccgaggccaagccggaccccattaaaggaggcttgcgcgtctccagtttcttcacc
tacaactgtctggctgactcgagggatctctacagtgagtgtttacgtactttctggagc
tgtcctaactgtgacctctacatgcctctgactccactggagcgcatgcagcacgaggcc
tcctgcaggccagccgaagaacagcagcagcaggaggaagagtcgaaaggtgtaaaggcc
ggctcgtcctcgtcgtccagtcttagcagagtttatcactgtgacgtctgtaacgaagac
ctgaccctcacctccaccgagatcctcaaacataaaaggcagcacatgtattctgccaag
taa
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