Larimichthys crocea (large yellow croaker): 104925952
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Entry
104925952 CDS
T04659
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104925952 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104925952 (ddx6)
03036 Chromosome and associated proteins [BR:
lco03036
]
104925952 (ddx6)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104925952 (ddx6)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104925952 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
104925952 (ddx6)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104925952 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
104925952
NCBI-ProteinID:
XP_010738007
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All DBs
Position
VII:24904895..24914464
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AA seq
488 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGGGGGGGPQQQQLNQMKGAINNGS
SQPAPTTNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMG
WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRE
LALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVA
KVNQVQMIVLDEADKLLSQDFVVMMEEILGFLAKQRQILLYSATFPLSVQKFMNAHLQKP
YEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKIS
QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLG
ETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHS
ESGEEVKP
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccaggacggagaacccggtgattttgggcttgtccaaccagaatggacag
ctcaggggctcggtgaagccggcaggagcaccaggtggaggaggaggtggcggaggagga
ggaggaggccctcaacaacagcaacttaaccagatgaaaggcgcaatcaataatggcagt
tcccagccggccccgacgactaacgccgtcatcaaacctggagatgactggaagaaaaat
ttgaaattgcccccaaaagacatgaggatgaaaacttcggatgtgactgcaactaaaggc
aacgagtttgaagattattgcctaaagagggagctgctcatgggaatctttgagatgggc
tgggaaaagccatctccaatccaggaggaaagcattcccattgcactgtcaggaagggac
atcttggcaagagccaagaacggcacgggaaagagtggagcctacctcattcccttactt
gaacgcattgacctgaagaaggactgcatacaagctttggtcatagtgcccaccagagaa
ctggctctgcaagtaagccaaatatgtatccaggtcagcaaacacatgggcggagtgaag
gtgatggcaaccacgggtggaaccaacctacgtgatgacatcatgagactcgacgaaacg
gtacatgtggtcatcgctactcctgggaggattttagacctcattaaaaaaggagtggcc
aaagtcaatcaagtgcagatgattgttctggatgaagctgacaaactcctgtctcaggat
tttgtggtcatgatggaggagattctgggttttctggccaaacagaggcagattctgctc
tattctgcaaccttccctctcagtgtgcagaagtttatgaatgcacacttgcagaaaccc
tatgagatcaacctgatggaggagcttacgctgaagggtgtgactcagtattatgcttat
gtaactgaaaggcaaaaggttcattgccttaacaccttgttctccaggctccagatcaac
cagtctataatcttctgcaactcctctcagagagtggagctccttgccaagaagatctcc
cagctcggttattcatgtttctacattcatgccaagatgagacaggaacatcgtaaccgc
gtgttccacgacttcagaaacggcctctgcaggaatctcgtctgcactgacctcttcaca
agaggaattgacattcaagctgtgaatgttgtgatcaattttgactttcccaagctggga
gaaacgtacctgcatcgcattggaagatctggccgcttcggacacttgggtctagccatc
aacctcatcacttacgatgatcgcttcaacctgaaagggattgaggagcagcttggaaca
gagatcaaacccatccctggcatcattgacaagagcctatatgtggcagagtaccacagt
gagagtggtgaagaagtcaagccatga
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