Larimichthys crocea (large yellow croaker): 104926020
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Entry
104926020 CDS
T04659
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X3
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04136
Autophagy - other
lco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104926020 (atg4b)
04136 Autophagy - other
104926020 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104926020 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104926020 (atg4b)
03029 Mitochondrial biogenesis [BR:
lco03029
]
104926020 (atg4b)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
104926020 (atg4b)
Membrane trafficking [BR:
lco04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
104926020 (atg4b)
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104926020 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
104926020
NCBI-ProteinID:
XP_010738092
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All DBs
Position
XVII:complement(14849193..14855915)
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AA seq
394 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSDPVWILGEEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALVCRHLGREWRWARGQKQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDMAGACAEPEGAGELNGCLEGACALAEEETALWKPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPYEDGQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCNRGGLPMFELVDSQPSHM
VSVDALNLTPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctaccttgacgtacgacacacttcgctttggagagtttgaagattttcct
gagacttcagaccccgtgtggatcttaggggaagaatacaatgcactcacagagaaagat
gagattttatcagatgtcacttcacgactgtggttcacatacagaaaaaacttcccacca
atcggtgggacaggaccaacatcagatacaggatggggatgtatgctgcggtgcggccag
atgatccttggcgaggccttggtgtgtagacatttaggccgagagtggagatgggccaga
ggccagaaacaaagagaagagtacatcagcattctcaacgccttcattgacaaaaaagac
agctattattccatccatcaaattgcccaaatgggagtcggagagggaaagcctataggc
cagtggtatggaccaaacacagttgcccaagttctaaagaagctggccgtgttcgatacg
tggagcagactagtcgtacacgtggcgatggacaacaccgtggtcatcgaggagatcaag
cgtctctgcatgccgtggctggacatggcaggagcctgcgctgaaccagagggagcggga
gagctcaacggttgcctggagggggcgtgcgccctggctgaggaggagacggctctgtgg
aaacctctggtcctgctcatccccctcaggctgggcctgagtgatataaatgaagcctac
attgaaaccctcaagcaatgcttcatgctgcctcagtccctgggtgttattgggggaaaa
cccaacagtgcccattacttcattggttatgtcggcgaggaactcatctacttagacccg
cacaccactcagcccgcagtggaaccatacgaagacggccaggtccccgatgagacgtac
cattgtcagcacccaccctgccgcatgcacatctgtgaactggacccatccatcgcagcg
ggcttcttctgtagaacagaggacgagtttgacgactggtgtatgcgcataagaaggctg
tcgtgcaacagaggcggcctgcccatgtttgaactagtagacagtcagccctctcacatg
gtcagcgtggacgcccttaaccttactcctgatttctcggactcggacaggttggagcgg
ttctttgactcggaagacgaagagtttgagatcctttccctgtga
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