Larimichthys crocea (large yellow croaker): 104926303
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Entry
104926303 CDS
T04659
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104926303 (upf3a)
03015 mRNA surveillance pathway
104926303 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104926303 (upf3a)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104926303 (upf3a)
mRNA cycle factors
P-body specific factors
104926303 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104926303
NCBI-ProteinID:
XP_010738428
UniProt:
A0A6G0J607
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Position
XVIII:complement(18769484..18776265)
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AA seq
468 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDIPREQDNTPGNAKQKEEKKEVFTKVVLRRLPPNLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDVGETDRGKWEKAGGQMKSK
DSKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDGGDGKMGKEDREELGNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSTGKGYDCIPAGHSPEPGTEHCYEVVAMATGLEKGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagatgaccgtgggcaaggagaagagcgtcgtggagatccag
ttcagagacatcccgagggagcaggacaacactccgggcaacgccaagcagaaagaggag
aagaaagaggttttcaccaaggtggtgcttcgaaggcttccgcctaacctgtcaaaggag
cagctggaggaacagctcagcccgcttccatcctatgactatttcgagttctttccagcc
gatcaaagtctttatccacacctgttctccagagcgtacatcaactttaaaagccctgaa
gatatcctgctgttcagggaccgattcgatggttatgtcttcattgacaacaagggccag
gagtatcctgcagtagtagagttcgcccccttccagaaaatctccaagaagaagctaaaa
aagaaagatgccaaggccgggagcattgaagaagacccagaatataagcggttcttggag
aattactcctgtgacgaggagaagtctatggccaaccctgagactctgctgggagagata
gaggccaagaccagagagctcatcgccaaacggacaacaccgctgttggagtacatcaaa
aataagaaaattgagaaacagagaataagggaagagaagagagaggagaggagacgcaga
gagcttgaaaagaaacggcaaagggaggaagagaagaggaagcgacgggaggaggagagg
cgcaaacggaaagaagccgagaagcagaagaagctgtctgacaaagacatcaaaattaag
ctcctgaagaagagcgacagggacgacgatgtggattcagaccgaatgaaggacaaaagt
gacgtcggggagacagacagaggcaaatgggagaaagctggaggacaaatgaagtcaaag
gactccaaggaaaaaggtcagcctgagagtgacaaagagcagagagagcagcacggccgc
aggcagagagataaggaccaccgcgggaaagacgaggagaggaagcgacagcgacaccac
tacgagttcgacaagtttatgaggcgcaaagatgagaccaaatgggggaagggctactgc
caggaccgagccaagaaagagggtcaccatcatggctactcttactgtcctgacggtggt
gatgggaaaatggggaaggaggacagggaggagctgggtaacaggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtccagccatgcagctctatcagccaggcgcacgcaac
aggaagcgcatgagctccacgggcaaaggctacgactgcatccccgcgggccactcgccc
gaacccgggacggagcactgctatgaggtggtcgctatggcgacggggctggagaaaggg
ttcgagaagagcaaagatgaacagtga
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