Larimichthys crocea (large yellow croaker): 104926312
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Entry
104926312 CDS
T04659
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104926312
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104926312
Enzymes [BR:
lco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104926312
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104926312
Ubiquitin system [BR:
lco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104926312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
104926312
NCBI-ProteinID:
XP_019111297
LinkDB
All DBs
Position
XVIII:complement(18463910..18500164)
Genome browser
AA seq
2620 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPDEQAQG
DGPPQLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCE
ACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELL
AMATNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGF
QMLHDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEEL
KKEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNA
LNEVNKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEK
ILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKAS
WTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKI
LDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLRKKMPINI
QTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKEEQAEFDPQT
VRPGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWY
SKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAY
MMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFD
RLKASYDTLCVLDGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAF
RGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILNRIKANAAHTKIELFIGGEVV
DPADDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPE
VESCLPGVIMSLHLRYISFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNTTVENLRAVC
LDHAKLGENSLSPSLDSRFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSG
GLPLVLSMLTRNNFLPSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNAEGN
IPVSPINQATHDQALVLQSALQNIPNPASECMLRNVAIRLAQQISDEVTENNFFQASKYI
PDICVIRAVQKIVWASGCGTVQLVFSSNEEISKIYEKTNAAKEPDGEDEQVCCEALEVMT
LCFALMPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFF
ITLLFTVLGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDE
VKRTGETGVEETILEGHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNV
YLQYMKSGEFPTEQAIPVCSTPASINAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCET
LTEWEYLPPVGPRPNKGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDD
MSGDEKQENESNVDPRDEVFSYHHQFDDKPSSKSEDRKEYNIGVLRHLQVIFGHLAASRL
QYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFA
DQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVD
TVKRLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDD
VNPENQVIQQNEPSEPTPPGSSKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYK
FDDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSL
DKDSELVKYISELTISSTKPHQVKMPGVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLT
CNSVYLNPPPGQDHLLPEAEEIAMISAQLAARFLFSTGFHTKKVVRGPASDWYDALCILL
RHSKNVRYWFAHNVLFAYPNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTA
SPGPSTQGCDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLK
LNVPATFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVSSRMQSSINGNPPLPNP
YGDTNLTAPVMPVQQLVAEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVL
SELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKN
HYQKRAYQCIKCMVALFSNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYT
YNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEELKCTQGSPGKEPDEQEAPDDQ
DSSPPEDTSLYPHSPGTAQFQQNNHPHGQPYTGPAAQHMNNPQRPGPASAPTPGPTQTPT
PAPGPTPGPGPRAQENWESTEEVAPAPAPTPAPAPAPPKE
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggttctccggtggggggcaatgacagtcagggccagggccag
ggccagggccaggcacctgatgctcagagccaacccccactgccacagaaccagacttca
tctccaaactcatctaatgagaactctccagtgagcccgccagatgagcaggcccagggg
gatgggccccctcagctggaagaggaggagcccgccttccctcacactgacctagctaag
ctggatgacatgatcaacaggcctcgttgggtcgttccagttttgccaaaaggagagtta
gaagtcctcttggaagctgctatagacctgagtaaaaaaggactggatgtgaagtgtgaa
gcatgtcagaggtttttccgagatggtctgaccatctccttcacaaagatcctgacagac
gaggcggtcagcggctggaagtttgagattcataggtgcatcatcaataacacacaccgg
ttggtggagctgtgtgtggccaagctctctcaggactggttccctctactggagctgctg
gccatggccaccaaccctcactgcaagttccacatctacaatggcacacggccctccgag
actgtccctgctggagcacagctggccgacgatgagctcttcgcccgaccaccagaccca
cgctctcctaagggctggttggtggacttaataaacaaatttggcacgttaaacgggttt
caaatgttgcacgatcgcttcatgagtggccaagcactgaacgtccagatcatcgctgca
cttatcaagccttttggccagtgttatgagttcctcacattgcacacggtaaagaagtac
ttcctcccagtcatcgagatggttcctcagtttctagagaatctcacagatgaggagctg
aagaaagaggccaagaatgaagccaaaaacgacgcactgtccatgataatcaagtctctg
aagaatctagcttctcgcgtaccagggcaggaggagacggtgaaaaatttagagattttt
aggttaaaaatgattcttaggttattgcaaatttcttcttttaacggcaaaatgaatgca
ctaaatgaggtgaacaaggtgatctccagtgtgtcctactacactcaccggcataaccct
gaagaggaggaatggctgactgcagagcgcatggcggagtggatccagcagaaccacatc
ctgtccattgtgctgagggacagtttgcatcagccgcagtacgtagagaaactggagaag
atccttcgctttgttatcaaagagaaagcgcttacgatgcaggatctggacaacatctgg
gctgcacaggctggtaagcacgaggccattgtaaagaatgtccatgacctcctggccaag
ctggcgtgggacttctcacccgagcagctcgatcacctttttgactgtttcaaggcaagc
tggaccaatgccagcaagaagcagcgtgaaaaactgctggaacttatcaggcgcttagct
gaggatgataaagatggggtgatggcccacaaggtcctcaacctgctgtggaacctggca
cacagcgacgatgtgcctgtagacatcatggaccaggctctcagtgctcacatcaagata
ctggattacagttgctcccaggacagagacacacagaagattcaatggatagatcgtttc
atagaggagctacgaaccaatgacaaatgggtgatccctgccctgaagcaaatcagagaa
atctgtagcctgtttggagaagcccctcaaaaccttagaaagaaaatgccaattaacata
caaacgaacttagtgggtcaaacccagagaagtcctcatgtgttttaccgccacgacctg
atcaaccagctgcagcataaccacgctctggtcaccctggtggctgagaacctctcggcc
tacatggagaccatgaggcagttctctaaagaagaacaggctgagtttgacccgcagacg
gtcaggccaggaagccgctacagccatgtccaggaagtacaggaacgcctcaacttcctg
aggttccttctaaaagacggccagctgtggttgtgcgcccctcaggccaagcagatctgg
aagtgtctggctgagaacgcagtgtttctgtgtgaccgcgaggcctgcttcaaatggtac
tccaagctgatgggtgatgagccagacctggacccggacatcaataaggacttctttgag
aacaatgttctgcagctggacccgtctctgctgacggagaatggcatgaagtgctttgag
aggttcttcaaggctgtcaattgcagagagggcaagctggtagcaaagcgcagggcctac
atgatggatgacctggaactaataggcttggactacctttggagggtggtaattcaagga
agtgatgacatagccagccgagccattgacctgctgaaagagatctacaccaacctggga
ccaaaactacaagtcaatcaggttgaaattcacgaagatttcatccagtcatgcttcgac
cgtctgaaggcgtcctatgacaccctgtgtgtgttagacggagacaaagatagcattaac
tgcgcccgtcaggaggcgatccgcatggtgcgtgttctcactgtgctcaaggagtacatc
aacgagtgcgacagcgactaccacgaggagaggactatactgccgatgtcgagagctttc
cgtgggaagcacatcacgttgatcgtccgtttccccaaccaggggcgtcaggtggacgac
ctggatatctggtcacacaccaacgacacaatcggctcggttcggcgcggcatccttaac
cggatcaaggccaacgccgcgcataccaagatagagctctttattggtggggaggttgtt
gatccggctgacgacaggaagctgattggacagctgaatttgaaggacaaaacgctgatc
acagccaagctgacccaggtgagtgccaacatgccctcaagcccagacagctcttctgac
tcatccactggatctcctggtaaccacggcaaccactacagcgatgggcccaaccctgag
gtggaaagctgtcttcctggtgtgattatgtcgctgcatctgcgctacatatccttcctg
tggcaggttgctgacctgggctgcaacctcaacatgcccctgcttagagatggagctcga
gttctcatgaagctcatgcccccagacaacactacggtggagaatctgcgagctgtgtgt
ctggaccacgccaagctcggcgagaacagcctcagtccttctctcgactcacgcttcttc
ggcccatcaccctcacaagtgctctacctcatcgaggttgtttatgctttgctgatgcca
gccagtgccactctgggcgaggacgccagcgacttccagtacaacttcttgaagagcggt
gggctgcccctggtgttgagcatgctcaccaggaacaacttcctcccatcggcagacatg
gagacacggcgtggggcttacctcaacgcactgaagatcgcgaagctcctccttaccgct
gtaggcttcgggcatgtgaaggctgtggccgaggcctgccagcccaacgctgaggggaat
attcccgtctcaccgataaatcaggccactcatgaccaggcactggtcctccagagtgcc
ctgcaaaacatccccaaccctgcctcagaatgcatgctgcgcaacgtagccatccgcctg
gcccagcagatttctgatgaagtaacagaaaataatttcttccaggcatcaaagtacatc
ccagacatttgtgtcatccgagcggtacagaaaatagtgtgggcatcaggctgtggtaca
gtgcagctcgtcttcagttcaaatgaagaaatcagcaagatatatgagaagacaaatgca
gctaaggagccagacggggaggacgagcaggtgtgttgcgaggccctggaagtgatgacg
ctgtgcttcgccctcatgcccaccgctctggacacgctcagtaaggagaaggcttggcag
accttcatcatagacttgctgctacactgccacagcaaatctgtgcgtcaaatggcccaa
gagcagtttttcctgatggcaactaggtgttgtatgggccatcgacccctcctcttcttt
atcaccctcctctttactgtgctcgggagtacagccaaggagcgagccaaacacgctgga
gactacttcactttactcagacatcttctgaactatgcctacaacagcaacatcaacctg
ccaaacgctgaggtgctcctcaacaatgagatcgactggctgaaacggataagggatgag
gttaagaggacaggggagactggtgtggaggagaccatcctggagggtcaccttggggtc
accaaagagcttttagccttccagacaccagagaagaagtactacatcggctgcgagaaa
ggaggagcgaacctcattaaggagctgattgacgacttcatcttccccgcatctaatgtg
tacttgcagtacatgaagagtggggagttccccacagagcaggccatccctgtgtgcagc
actcctgcttccatcaatgctggctttgagctactggtagcactcgccgtgggctgtgtc
cgcaacctcaagcaaatcgttgacaccctgactgacatgtactacttaggttgtgagaca
ctgacagaatgggagtacttgcctccggtggggccgcgacccaacaaaggctttgtaggt
ttgaagaacgccggggccacctgttatatgaactccgtcattcagcagctgtacatgatc
cctccaatccgcaatggcatcctggccatcgagggcacgggcaccgatgtggacgatgac
atgtcgggggatgagaagcaagagaatgagagcaacgtggatcctcgtgacgaggtgttc
agctaccaccatcagttcgatgataaaccctccagcaagtcagaggacaggaaagagtac
aacattggagtactgcgtcacctacaagtcatttttggacatctggctgcatccagattg
cagtactatgtcccaagaggattctggaaacagttcaggttatggggtgagccggtgaac
ttgagggagcagcacgatgccctggagttcttcaactctttggtggacagtttggatgaa
gctctgaaggcactgggccaccccgctatgcttagcaaggtgctgggggggtcctttgct
gaccagaagatctgtcagggatgcccccacaggtatgagtgtgaggaatcattcacaaca
ctcaatgttgacatcagaaaccaccagaacctgttggactccatggagcagtatgttaaa
ggagatctgcttgagggggccaatgcctaccactgtgagaagtgtaataagaaggtggac
acagtgaagcgcctgctgatcaagaagctgccgcccgtcctggccatccagctgaaacgc
ttcgactatgactgggagagggagtgtgccatcaagttcaatgactactttgagttcccc
agggagctggacatggagccgtacacggtagctggtgtggccaaattagagggcgatgac
gtcaacccggagaaccaggtgatccaacagaacgagccctctgaacccacacctccaggc
agctccaagtatcgtctggtgggagtgctggtccactcaggccaggccagcggtggacac
tactattcctacataatccagaggaatgggggcgacggcgagaagaaccgctggtataaa
ttcgacgatggcgatgtgactgagtgcaagatggacgatgaggaggaaatgaagaaccag
tgcttcggaggggaatatatgggcgaggtgttcgatcatatgatgaaaaggatgtcgtac
cggaggcagaagcgctggtggaacgcctacatcctattctatgagcgtatggactcactg
gacaaggacagcgagcttgtcaaatacatctcggagttgaccatctcctccaccaagccg
catcaggtcaagatgcctggtgtcatcgagtgcagcgtccgcaagcagaacgtccaattc
atgcacaaccgaatgcaatacagcctggaatatttccagttcattaagaaacttctgacc
tgtaacagtgtctatttaaaccctcctccaggacaagaccatcttctgccagaggcagag
gagattgctatgataagtgctcagctggctgccaggttcctcttcagcacaggttttcac
accaagaaagtagtacggggtcctgccagtgactggtacgacgccctctgcatcctgctg
agacacagtaagaatgtacgctattggtttgcacacaatgttctgtttgcgtaccccaac
cgcttctcggagtacctgctcgagtgcccgagcgctgaggtccgtggcgcatttgccaag
ctcatcgtcttcatcgcccacttctccctgcaagacggcccctgcccctcacccaccgcc
tcacctggaccctctacacagggctgtgataatctcagtctaagtgaccacctgttgaga
gctgtactcaacctgctcagaagagaggtttctgaacacggccgtcacctgcagcagtac
ttcaacctctttgtcatgtatgccaatctgggcctggcagagaagacccagctgttgaag
ctgaacgtccctgccactttcatgttggtcgctctggacgagggtcccggccctcccatc
aaataccagtacgctgagctgggcaagctctacactgtggtctcccagctggtccgttgc
tgtgacgtctcttcacgcatgcagtcctccatcaatggtaaccctccgctccctaatccg
tacggtgacaccaacctgacagccccagtgatgccggtgcagcagctggtggcggagatc
ctgttcgtgaggaccagctatgtgaagaagatcatcgaggactgcagcaactctgaggag
acggtgaagctgcttcgcttcagctgctgggagaaccctcagttctcttccactgtgctc
agtgagctgctctggcaggtggcgtactcctacacctacgagctgaggccttacctggac
ttgctgctacagatcctgctcatcgaggactcctggcagacacacaggatccacaacgtg
ctgaagggcattcctgatgacagagatgggctttttgacaccatccagcgctccaagaac
cactaccagaaacgagcctaccagtgcatcaagtgcatggtggccctctttagcaactgc
tctgtggcttaccagatcttacagagtaatggtgacctgaaacggaagtggacgtgggca
gtggagtggttaggcgatgagctggagaggaggccatacacaggaaacccccagtacacc
tacaacaactggtcccctccagttcagagcaacgagacctccaacggctatttcctggag
cggtcacacagtgcacgtatgacactggccaaagcctgtgaactttgtcccgaggagctc
aagtgtactcagggaagcccagggaaggagccggatgaacaggaagcacctgatgatcaa
gactcgtcccctcctgaagacacctctctgtaccctcactctcctggaaccgcccagttt
cagcagaacaaccacccccatgggcagccgtacaccgggccggctgctcagcacatgaac
aacccccagcgtcctggtcctgcctctgccccgactccaggccccacccagaccccaacc
ccagcccctggtcccactcctggtccaggcccgcgagcacaagagaactgggagagcacc
gaggaggtcgcccctgctcccgcacccaccccagccccagcgcccgccccgcctaaggag
taa
DBGET
integrated database retrieval system
