Larimichthys crocea (large yellow croaker): 104926627
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Entry
104926627 CDS
T04659
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104926627 (col17a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
LapA_dom
Motif
Other DBs
NCBI-GeneID:
104926627
NCBI-ProteinID:
XP_027136895
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Position
I:33043665..33065339
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AA seq
1657 aa
AA seq
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MDNLITSVTSGGGAGGSSKVVTKSVTTSRLTSQSELSAGGSGGRAASGGSSGTSSSVLIT
SSSSHASSAGGSGATKGTGGISITTVGASSSSSGGGSSAVSGGSGSGAGFRAAGGGSSSM
SSSFASGGTEGKWEGGLGAVTVSTVTKSSYSSGGSGEAKRGSSSAVSHSPLPKERRNMTT
MAAAHPDVFDESSSTNSSPEYNRKEYGASLSTSTSATRGRSHSRESEIRARLQSASTAAS
WTELDDVKRLLRGNPSTSTSPTQSPNNTMPIPKKASVETRTMSESSSTEQYGSIWSGGMG
SSYSYTNTNPNNLSTALPLSYQSGGLQNNLTLSAPSMNSGFSGGGTVPMYGVQNNLITSS
PTVLSPTGTNTPIVYGVQKNASSTGISTTTVRPSSPTYDESTGKDFKFVLIEKENTPVKK
EAEQLIMTKDTGKQFKSAAPATFSASYSEDSLQREKKQSSSTAEEEKTETKSAAMKAAMK
DKSTYAEIHEDKSGLGFCSCCTWWKWLLGLLLTLLFLLGLLFGLIALGEELKRLRKRVDA
LETITGTASARTSRLSASSGINIIDPLDSSYIDRSSAGSTLTHSDNGINLGVAGSGPGQD
PAALQRTIQHLVRSELRSDAVRETLAYSLKGERGDPGPKGDAGPLGQKGDSGFPGLPGPP
GQMGHPGLDGPRGPKGSAGEPGSEGPPGQRGREGQMGPRGETGPPGFGDKGTQGEPGRPG
LVGAPGPVGPKGAIGEQGASGNPGAPGPKGFQGEAGAPGAKGDRGMSGPSGIKGDPGERG
VRGPAGEPGQTGPQGPVGPKGAKGITGETGPMGLPGVRGQPGILGDIGPPGTPGLQGPPG
IAGNPGQPGVKGEPGLPGKVIASISGSDTVAVPGPPGPSGPPGPAGTPGVSGPIGPAGVP
GPPGPKGGRGEDGEKGEKGEKGEKGEKGDEGKPSEPGVPTTQREKLSSVQGQPGPPGPPG
PPGAPGPEGPPGETKQGPPGRRGPPGQPGVGSPGPPGERGEPGSFVPNSETFFAGPPGPP
GPPGPQGPAGGQGEQGYQGEPGQPGLPGSPGRPGDQGVGFPGQPGSIGPPGPPGPPGPEG
PEGPNGDTGAPGAPGIPGGSFGGSYGPAPPGPPGPPGPPGRDGGVSGSTDVGQYIAEYLQ
SDSIRQYLAGAPGPPGAPGAPGSPGTPGVPGSPGAPGSGGDGSVDDVASRVLSYIQSRGY
AGTRGGSPGPPGPPGPPGSISVNDIISLLQREDIRRYVAGPPGPPGAPGPPGSGASGHGG
YTFNTQEVAERVLTLMNERGVVGAPGPPGPPGSPGLPGNSLSNGYQPAQGPPGPPGIPGI
PGPPGPQGPPGPTGSGNYISSNIHDYLQSVAFRGPPGPPGPPGPEGPPGRTLELVSYAQH
VNRETPGVERQEYIKPDGSRGAMFGLPGPPGPPGPPGHKGEPGVTSMRDWNLDTGDYSSM
AIRVTDYIKSHGLLHDIVRDSERVVQGPPGPPGLPGIPGHSSLVSSQNVVDVVEYIKSRG
VLQDIVKEYNSRVFQGPPGPPGPPGPPGHSRWFGSHGNTTDLLEYIKSHALLRDIERTTN
ERVIQGPPGPPGPQGPPGYSRLFGSHTNVTDLVEFIRAHGAIVGPPGRPGPKGDIGFPGP
KGERGERGFPGPEGRAGQKGDRGEFPLMTTRRRRRNV
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggataatctcatcacatccgtcacttctggtggaggggctggaggaagtagcaaagtt
gtcacaaaatcagtcacaacatctcgactgacatcacaaagtgagctgagtgcgggaggg
tcaggtggaagagctgcgtcaggaggctctagcggcacaagcagctcagttctgatcaca
tccagcagctcccatgcatccagcgccggtggatccggagccaccaagggtactggaggc
atcagcatcactactgtaggagcttcctcatcctcctcaggtggagggagttcagcagtt
tcggggggctcggggtcaggggcagggtttagggctgctggaggagggtcctctagcatg
tcctctagttttgcaagtggtggtacagaaggaaaatgggaagggggccttggtgctgtg
acagtttcaacagtgaccaagagcagctacagttcaggaggatctggggaggcgaagaga
ggatcatcgtcagcagtcagtcactcacctctaccgaaagagaggaggaacatgaccacc
atggcagcagctcatccagacgtctttgatgagagttcaagcacaaactcctctccagag
tataacaggaaggagtatggtgcttcactttcaacctcaacgtctgccaccagagggaga
tctcacagcagagagagtgagatcagagcgagacttcagagcgcttcaactgcagccagc
tggacggagctggatgacgtgaagcgtctgctgagggggaacccctccaccagcaccagc
cccactcagtcacccaacaacacaatgcccatccccaagaaggccagtgtggaaaccagg
accatgtctgagagctccagcacagaacaatatggcagcatctggtctggaggcatgggc
agcagctacagttacaccaacaccaaccccaacaacctgtccactgccttaccattatca
taccagtcaggaggacttcagaacaacctgacgctcagcgctccctccatgaacagtggg
ttctctggtggcggcactgttccaatgtacggtgttcagaataacctgatcaccagcagc
cccaccgtcctctctcccactggaaccaacacaccgatagtttatggtgtgcagaaaaat
gcatctagcactggaatcagcacaaccacagtgagacccagcagccccacttatgacgaa
tccacaggcaaagactttaagttcgtgctgatagagaaggagaacactcctgtcaagaag
gaggcggagcagctgatcatgaccaaagacacagggaagcagtttaagtctgctgcacct
gctactttttctgcttcgtactctgaggactcactgcagagagaaaagaaacagtcttcc
agcacagcagaggaggaaaaaacagaaactaaatctgcagcaatgaaagctgccatgaaa
gacaaatccacctatgcagagatccatgaggataaatctggtttgggcttctgctcctgc
tgcacctggtggaagtggctgctcggcctcctgctcacactgctcttcctcctcggcctc
ctctttgggctcatcgctttgggtgaagaactgaaacgtctgaggaaacgcgttgatgct
cttgaaaccatcactggcaccgcctcagccagaaccagccgcctgtcggcctcctccggc
atcaacatcatcgacccgctggactcgtcatacatcgacaggagttctgctggatccact
ctgacccactctgacaatgggatcaacctgggggttgctgggagcggaccgggacaggac
cccgctgccctgcagagaaccatccagcatctggtcaggtctgaactccgctcggacgct
gtaagagaaacacttgcatactcactgaaaggagagcgtggagatccaggacctaaaggt
gatgctgggccacttggacaaaaaggtgatagcggctttcctggcctgccaggccccccg
gggcagatgggtcacccaggactggatggaccaagaggaccaaaaggaagtgcaggtgaa
ccaggttcagagggaccgccaggtcagaggggccgggagggtcagatgggcccccgtggt
gaaactggacccccaggttttggagacaaaggaactcaaggagagccgggacgtcctgga
cttgttggtgctcctggacctgtggggccgaaaggtgccattggagagcagggtgcctca
ggaaaccctggtgctccaggtccaaagggtttccagggcgaagcaggagctccaggagct
aaaggtgatcgaggaatgtcagggccttcgggaatcaaaggagatccaggagagagggga
gtacgtggaccagcaggtgaaccaggacaaactggaccacaaggccctgtcggaccaaag
ggagctaaaggaattactggtgagacaggtccaatgggacttcctggtgtgagaggacag
cctggaattcttggagatattggtcccccaggcactcctgggcttcagggaccaccaggc
attgctggaaatccaggacagcctggtgttaaaggtgaaccaggattaccgggtaaagtc
atcgcttcaatctctggctctgatactgtggctgtacctggaccaccagggccttctggg
cctccaggtcctgctggaacccctggtgtgtctggtcccattggccctgctggtgttcct
ggacctcctggtcctaagggaggacgtggagaggatggagagaaaggagagaaaggagag
aaaggagaaaagggggagaagggagatgaaggaaaacctagcgagcctggtgtccccacc
acccaaagagagaaactttcctcagtacaaggacagcctggtccaccaggacctccaggg
cctcctggtgcacctggtcctgaaggtcctcctggtgaaactaagcagggtcctccggga
cgcagaggtcctcctggacagccaggtgttggttcacctggacccccaggagagagagga
gaacctggtagctttgtgcctaactcagaaaccttttttgctgggccaccaggacctccg
ggaccaccaggcccacagggtccagcaggtggccaaggagaacaagggtaccaaggtgaa
ccaggtcaaccaggtcttcccggaagcccagggcgtccaggggatcagggtgttggtttc
ccaggtcagcctggatctattggcccaccaggtccaccaggtccaccaggtccagaagga
ccagaaggacctaatggtgatacaggagcccccggtgccccaggaatccccggaggatct
tttggtggctcatatggcccagcccctccaggcccacctggaccacctggtccacctgga
agagatggaggtgtgtctggatcaaccgatgtgggccagtacattgcagaatatcttcag
agtgatagtatcaggcagtacctggctggagctcctgggcctcctggtgcgccaggggct
ccagggtctccagggactccaggggttccagggtctccaggggctccagggtccggaggg
gatgggtctgttgatgatgttgccagccgagttttatcctacatccagagtagaggatat
gcggggactcgtggtggctctcctggccctccaggtcctccaggtccacctggctccatc
tctgtcaatgatatcatcagcctattgcaacgagaggacataaggagatacgttgctggt
ccacctggtccacctggtgcacctggaccacctggttctggagcttcaggccatggcggc
tacacgttcaacacacaggaggtggctgaacgtgtcctcacccttatgaatgagaggggg
gtggtaggtgcccctggacccccaggacctcctgggtctcctggtcttcctggaaactca
ttatcaaatgggtatcaacctgcacagggacctcccggacccccaggtatcccaggtatc
ccaggtccaccaggtccacagggtccacctggcccaacaggatctggaaactacatcagt
tccaacattcatgactacctgcagagtgttgccttcagaggcccaccaggtccccctggt
ccccctggacctgagggcccacctggtcgaaccctcgaactggtttcttatgctcagcat
gtcaacagagagacgcctggagtagaacgacaagaatacatcaaacctgatggttcaaga
ggagctatgtttggacttcctggtccaccaggccctcctggacccccaggacacaaggga
gagccaggcgttaccagcatgagagactggaacctggatactggagactactccagtatg
gctatcagagtaactgattacatcaaatcacacggtcttctccacgatattgtgagagac
tctgaacgtgttgttcaaggacctccaggacctcctggacttccaggaatacctggacac
agctcattggttagctcccaaaatgttgtggatgtggtggaatacataaaatcccgcggt
gttctgcaagacattgtgaaggagtacaacagtcgtgtcttccaaggacctccaggacca
cccggccccccaggtcctcctggacacagccgatggtttggttcccatggaaacaccaca
gatctgttggaatacataaaatctcacgctctgctacgtgacattgaacggaccacgaat
gaacgtgtcattcaaggaccaccggggccacctggccctcaaggaccccctggatacagc
cgattgtttggttcccacacaaacgtcactgatttagtggaattcatcagagcacatgga
gccattgtggggccgcctgggagaccagggccgaaaggagacataggattcccaggacca
aaaggtgagagaggtgaacgaggctttcctgggcctgaaggacgcgctggacaaaaaggt
gacagaggagaattcccactgatgactacaaggaggaggaggaggaacgtttga
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