Larimichthys crocea (large yellow croaker): 104926657
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Entry
104926657 CDS
T04659
Symbol
atg4d
Name
(RefSeq) cysteine protease ATG4D
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04136
Autophagy - other
lco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104926657 (atg4d)
04136 Autophagy - other
104926657 (atg4d)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104926657 (atg4d)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104926657 (atg4d)
03029 Mitochondrial biogenesis [BR:
lco03029
]
104926657 (atg4d)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
104926657 (atg4d)
Membrane trafficking [BR:
lco04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
104926657 (atg4d)
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104926657 (atg4d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
104926657
NCBI-ProteinID:
XP_027138183
LinkDB
All DBs
Position
X:complement(8912490..8920812)
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AA seq
502 aa
AA seq
DB search
MNSVSPSAAQYVGGVMQDELMEGRRQQQQPLDRQGSFGLRTPQTLDPSSRDATGEPDEMD
RLKAKLMSAWNNVKYGWTVKSKTSFNKVSPVTVLGHSYLLNSEDEVERFRLAFVSRIWLT
YRKDFPQLEGSTLTTDCGWGCMLRSGQMLLAQGLLVHLMPRDWAWPDAQQLTDVDFEVFR
PRSPARAGGVPIPSFGSPRGSNTPEKSPPSEQRPKCSQKKRPESVRDRQAEPVHHRLVTW
FGDQPSAPFGIHQLVEVGKSSGKKAGDWYGPSIVAHILRKAVAKTSALHNLAVYVAQDCT
VYKEDVVRLCDLSLSQNPPDPSSQAWKSVIILVPVRLGGEALNPSYIECVKNILKLDCCT
GIIGGKPKHSLYFIGFQDEQLLYLDPHYCQPVVDVSQVNFSLESFHCSAPKKMPFNRMDP
SCTIGFYAKNKKDFESLCSAVSEALSSSKEKYPIFTFVEGRGQDYGLEGHSSNNTGPAAH
ILPPGRLGRSNNRRNSDEFVFL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaactcggtttcccccagcgcagcgcagtacgtggggggagtgatgcaggatgagctg
atggagggccggaggcagcagcagcagccgctggaccgacagggcagcttcggcctcagg
acgccgcagacactagatccaagcagcagagatgcaaccggagagcccgacgagatggac
agactgaaagccaaactgatgtcagcgtggaacaacgtcaaatatggctggacggttaaa
tctaaaacctctttcaacaaggtgtccccagtcaccgtgctgggacactcgtatctgctc
aacagtgaagacgaggtggagcgcttccgtctggctttcgtgtccaggatttggctgacc
tacaggaaggacttccctcagctggagggctccacattgaccacagactgcggctggggc
tgcatgctgcgcagcgggcagatgctgctggcgcaggggctcctggtccatctgatgccc
agagattgggcttggccggatgctcagcagctaaccgacgtggactttgaggtcttcagg
cctcgttccccagcccgtgccggaggagtccccatcccctccttcggctccccgcgagga
tccaacacccctgaaaagtccccgccgagcgagcagcgccccaaatgcagccagaaaaag
agacccgagtctgtgagggacagacaggcagagcccgtccaccacaggttggtcacctgg
ttcggggatcagccctcggcaccttttgggatccaccagctggtggaagtcggcaaaagt
tcagggaagaaggccggcgactggtacggcccctctatagtggcacacatactacggaaa
gcggtcgctaagacgtctgcactccacaacctggcggtgtacgtggctcaggattgtaca
gtgtacaaagaggacgtggtccgtctgtgtgacctctcactaagccagaacccgcccgat
ccgtccagccaagcctggaagtccgtcatcatcctggtgcctgtgcggctcggaggagaa
gccctcaacccgtcctacatcgaatgtgtcaagaacatcctgaagctggactgctgcact
ggaatcatcggaggcaagccgaagcattcgctttacttcatcggcttccaagacgagcag
ctgctgtatctggaccctcactactgccagcctgtggtggacgtgtcacaagtcaacttc
tcactggagtcgttccactgtagcgctcccaaaaagatgcccttcaaccgcatggacccg
agctgcaccatcggcttctacgccaagaacaagaaagactttgagtctctgtgttctgcc
gtcagtgaggcgctgtcgtcatcgaaggagaagtaccccatcttcaccttcgtggagggt
cggggtcaggattacggactcgagggtcacagcagcaataacactggacccgcagcccac
atcctgcccccgggcaggctgggcaggagcaacaacagacgaaacagtgacgagttcgtc
ttcttgtaa
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