Larimichthys crocea (large yellow croaker): 104926923
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Entry
104926923 CDS
T04659
Symbol
shh
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104926923 (shh)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104926923 (shh)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104926923 (shh)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C46: hedgehog family
104926923 (shh)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Morphogens
104926923 (shh)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Intein_splicing
Vint
DUF7764
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
104926923
NCBI-ProteinID:
XP_010739186
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Position
XXIII:8572220..8580531
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AA seq
413 aa
AA seq
DB search
MLLWTRIVLVGLICLSLVSSGMGCGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLGASG
RYEGKITRNSERFKELTPNYNTDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQWPGV
KLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGTLSRLAVEAGFDWVYYESKAH
IHCSVKAENSVAAKSGGCFPGSSTVTLQDGTKKAVKDLQTGDRVLAADDNGNPIYTDFIM
FIDQDSTTRRLFYVIETDSGHKITLTAAHLLFVGHNSTEEERMAAIFASQVQRGQKVFVF
DAERSRLEPVTVKRIYTQEHEGSFAPVTVQGTVVVDQVLASCYAVIEDHVLAHWALAPVR
LAHWVSSLLFSSQPQVSAQNDGVHWYSKILYQLGTWLLDSHSIHPLGMSVSPS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgctgctctggaccagaatcgtattggtcggtctcatctgcttgtccttggtgtcctct
gggatgggatgcggaccgggcaggggctacggcaggagaagacacccgaagaagctgaca
cctcttgcgtacaagcagttcatccccaacgtggcggagaagaccctcggggcaagcggc
agatacgaaggcaagatcacaagaaactccgagcgatttaaagaactgactcccaattat
aacacagacatcatattcaaggatgaggagaacaccggtgccgacaggctaatgactcag
agatgtaaagacaagctgaactctctggccatctcagtgatgaatcagtggcccggggtg
aagctgcgggtcaccgaggggtgggacgaagacggacaccacttcgaggagtctctccac
tacgagggcagggccgtggacatcaccacctcggacagagacaagagcaaatacggcact
ctgtccagactggcggtggaagccggattcgactgggtctattatgaatccaaagcccac
atccactgctctgtgaaagcagaaaactcagtggcagcaaagtcaggcggctgcttccca
ggctcctccactgtcaccctccaggatggcaccaagaaggcggtcaaagacctacaaacc
ggcgacagggtcctggcagcggatgacaacggaaacccgatttacaccgacttcatcatg
ttcatagatcaagactcgacgaccaggaggctcttctacgtgatcgaaaccgactcgggc
cacaaaatcaccctcaccgccgcgcacctcctcttcgtcggtcacaacagcacagaagag
gagcggatggcggcgatcttcgccagccaagtccaacgtggacaaaaagtgttcgtgttt
gatgccgagcgaagtcgactcgagcctgtgaccgtaaaacggatttacacgcaagagcat
gagggctccttcgcgcccgtgaccgtgcaagggactgtcgtggtggatcaggtccttgcg
tcctgttacgcagtgatcgaagaccacgtcctggcgcactgggccctggcacctgtcagg
ctcgcccactgggtgtcctcgttgcttttcagttcccagccacaagtcagtgcacagaac
gacggagtgcactggtactccaagatcctttatcaattaggaacatggctcttggacagc
cactcgatccatccacttgggatgtcagtatccccgagttga
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