Larimichthys crocea (large yellow croaker): 104927033
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Entry
104927033 CDS
T04659
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04137
Mitophagy - animal
lco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
104927033
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
104927033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104927033
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
104927033
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104927033
Multi subunit type E3
ERAD complex
104927033
LMBR1L-GP78-UBAC2 complex
104927033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-rbx1
zf-RING_5
zf-RING_16
DNA_pol_phi
Astro_capsid_p
Motif
Other DBs
NCBI-GeneID:
104927033
NCBI-ProteinID:
XP_019135134
LinkDB
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Position
XXI:complement(2760897..2775050)
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AA seq
556 aa
AA seq
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MPLSLLERLPWPTLQTYTALSAGLLAGTVLTVCSSESHPQEEIRRQPVHSSRIGRYIRDG
GQYLSPMYGDQAADVLVYLLTDSVFVWVMVNTACCILLLIAKLIQCFVFGPLRVSEKQHL
KDKFWKFIFYKFIFGFSVLNVQMVEEVVMWWLWFSVLVFLHLLAQLCKDRFEYLSFSPTT
PLSSHARVLLLLVVLLLCCGGLATLCSWLVHSQGRYTATFMAAECMLVTLRTTHVMFRYS
IHLWDMNQEGSWDNKSFYVYYTDLLMELLLRGLDLLHHMHMLVFSNIWLSMASLVIFIQL
CFLVEEVQKRIRRHHNYLRVLRNIETQFSVASADELAANNDDCAICWDVMNSARRLPCGH
LFHSPCLCSWLEQDMSCPTCRMSLNIGEGGEGHVEREATVDNMVGGPGVDAALNLNHLNH
FLHFGGSRIASWLPSFSVEVMATTNFLGIVPTNPSQIYTMAQQIQEMFPQVPLQLILQDL
EITRSIEVTTINILEGRIQPATPPLVSDHLLVQVSPPPEDEGGAISESEEDEDEETDDDD
DDDDDDDDDDDEEEWW
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcctctctcgctcctggagcggctcccctggcccactttacaaacatacacggcgctc
agtgctggtctgctggccgggaccgtcctgaccgtatgctcctctgagtcccacccacag
gaggagatccgcaggcagccggtccacagctccaggatcggccgctacatcagggatggt
ggacagtatctgagtcccatgtatggagatcaggctgcagatgtcctggtgtacctgctg
actgacagtgtgtttgtctgggtgatggtaaacacggcctgctgcatcttgctgcttatt
gccaaactcatccagtgttttgtgttcgggccgctccgtgtcagtgaaaaacagcacttg
aaggacaagttctggaagttcattttctacaagttcatctttgggttcagcgtcctgaac
gtccagatggtggaggaggtggtgatgtggtggctctggttctccgttctagtcttcctc
catcttctggctcagctctgcaaggaccgctttgaatatctgtccttctctccgaccacc
cccctgtccagccatgcgcgggtgctgctgcttttggtggtgctgctgctgtgctgcggt
ggtctggccactctctgcagctggctggttcacagtcaaggccgctacaccgccacattt
atggctgctgagtgtatgttggtgactctcaggaccacacacgtcatgtttcggtactct
atccacctgtgggacatgaaccaggagggcagctgggacaataagtccttctacgtctac
tacaccgacctgctgatggagctgctgctacggggcctggacctgctgcatcacatgcac
atgctagtcttcagtaacatctggttgtccatggcgagtctggtgatcttcatccagctt
tgttttctcgtagaggaggttcagaagagaatccgccgtcaccataactacctgcgggtc
ctccgcaacattgagacccagttttctgtggcgtctgcagatgaactggcagccaacaac
gatgactgtgcaatctgctgggatgtaatgaattcagctcggaggctgccctgtggtcac
ctctttcacagcccgtgcttgtgctcctggctcgaacaggacatgtcatgtccgacatgt
cggatgtccctgaacatcggtgaaggaggtgaaggacacgtggagagggaggccaccgtt
gacaacatggttggtggccccggagttgatgctgcactgaacctcaaccatctcaaccac
ttcttacactttggtgggtctcgtattgccagctggttgcccagtttctcagtggaagtt
atggccacaaccaacttcttgggcatcgtaccaaccaacccatctcagatctacaccatg
gctcagcagatccaggagatgtttcctcaggttcccctccagctgatcctgcaggacctg
gagatcactcgatccatcgaggtcaccaccatcaacatcctggagggacgaatccagcct
gccaccccgccactggtctctgatcacctgctcgtacaggtgtctcctccacctgaggac
gagggcggagccatcagcgagtcagaggaagatgaggatgaagagacggatgatgatgat
gatgatgatgatgatgatgatgatgatgatgatgaagaagagtggtggtga
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