Larimichthys crocea (large yellow croaker): 104927113
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Entry
104927113 CDS
T04659
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X2
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104927113 (helz)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
104927113 (helz)
3'-5' decay
Other 3'-5' decay factors
104927113 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
PhoH
AAA_16
zf-CCCH_4
VPS13_N
DUF4746
Motif
Other DBs
NCBI-GeneID:
104927113
NCBI-ProteinID:
XP_010739425
LinkDB
All DBs
Position
X:complement(11240463..11291529)
Genome browser
AA seq
2063 aa
AA seq
DB search
MADRRAEKSCEEASRSLTRREYEAAVSHSTDALVVLAPQTQPSGAPVPPSPTSLVTATGP
LRSRVLLYRIAAFLQLKNYDEADEDCKHVLAEEIARGDGSFQASLRSMLLDGSLQEVVSI
LSKALYGEPMNGIVAKDLTRLKMLFSEIEAINREMAPEYTDDQEEEVQDGWQFRPPPRGV
TSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENY
METLIEKWMNSLSPEKVLSDYLEGVNVETSSSLSVTVSTKKSSHSWTFSLLCKPARKLYR
IALLYDAHRPHFFITGVSAGERLQALPKGCQEWTPGEETAVAADNGLDHCVYKVAVGFST
EIFGTFRQTVVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDSSCKTIVE
FVPNETMAELERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LVLPLGREGFSSQPPPGVKERVYEAVIEEKTKDYIFLRICKDCCDELGLIPDREIQVELQ
FQLNRLPLCEMHYALDRIKDNTILFPDVGLVPTIPWSPNRQWDEQLDPRLNAKQKEAILA
ITTPITISLPPILIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSNSAADLYIKDYLH
PYVEAGNPHARPLRVYFRNRWVKTVHPVVQQYCLISGTHVTFQMPTREDILRHRVVVVTL
STSQYLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYS
EFARERNLHVSLLDRLYEHYPPEYPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQP
SHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGV
VSPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRK
EQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFVSICH
ENSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHHPTSQALHPHHHPH
PQHAQPASNKQGTQQQQHQQQQSPPKGKHANHTEHLPPEGYVQPNPAMLMGNPIRAFTPP
LGGTQAGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVDPRI
MSHPAAMAYNFNLLQAQNRGSPIPYSGVAHPSPLGMGQPSPDKELQADPIRNGKLEGCPK
SEQSRLQTPERKTADMKEKQGDLDTGQSRSLDSQSDGLVGFPNALLHRKDPSAAQRPLNY
HLAPPNPAFPPHPASGRAYPPQYPVSRLPYRVNQSQHPGMPQQSQQQQQQLSPAYTGGSH
NTSFFSGPIPPHRAVQSPTLDGPESGGVEEMSSSIRTPMGHPGGHHPGLSQHNRVNSFGE
DGPDGNLGDSLDLQGPLALEALSQQQQQQAARLGQWGEAPGPFLQGSVAFPLPQQLAHLA
QSGMARFPHQLLRATSWGLSANMEDEAVTPASTGPPFTRYPGLLREMPPQEQPEPREAAE
MQPPPQSRLLQYRQSQPRASGDPSSSLAATSNHAGPFPSGPYSHDTGRDLLNDNLLNNPA
LQQQHPGNPLYSTGSYPHQPPTHSASPPPSQVKYLLQEAQWSHGGAASVSPPQQNHLLGN
QGHGLPYGLPIMAHPSRQEQVHLMQLHHQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQHQQSQGPDQESYHPLSPRTSAATALHNVDEYEPRGPGRPLYQRRISSSYPDESSP
ANTHNTLSQQPQPCTSDPQDHPHPHIQHHQHPHPPYGYPSHDLWPSNGGGPGPFQNIPCN
GAGTLAQHRDLLASKALRQTEEQVKAEATAAAAQQTHPTHPHSLNSLQHLGQFPPLMPNN
KQQQQQQQPPPPPPPQAPTEASQGAPNLSKPPTMSYASALRAPPKPRAVRPEQVKKNSDP
LSLLQELSIGSSNGSNGYYSYFK
NT seq
6192 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttaaccaggcgg
gagtacgaggcggcagtcagccacagcacggacgccctggtggtccttgcaccgcaaacc
caaccttccggtgcccctgtcccgccaagccctacatcccttgtcaccgccaccggaccc
ctccgcagccgtgtcttgctctaccgaattgctgccttcttgcagctgaaaaactatgat
gaagcagatgaagactgcaaacacgttctggcagaagaaatcgccagaggagacggttca
ttccaggccagcttgcgctccatgctgttggatggcagcctgcaggaggtggtcagcatc
ctctctaaagccttgtatggagagccaatgaacggaattgttgcaaaagacttgaccaga
ttaaaaatgctcttctcagaaatcgaggctataaatagggagatggcaccagaatacaca
gatgaccaggaggaagaggtccaagatggctggcagttccggcctcctcccagaggagtc
accagcagtgaggagtacaccctctgtaaaaggtacttggaacagggtctgtgtcggtac
ggggcccagtgtacatcagcccactcgcaggaggagctgatggagtggcagaagcgctat
gcgtcacgcctcatccgcctcaaacagcagcaggagagcaaacactttacagagaactac
atggagactctgatagagaagtggatgaactccctctccccagagaaagtgctaagtgac
tacttggaaggagtgaatgtagaaaccagctccagcctctctgttaccgtctccaccaaa
aagtcctcccactcctggaccttctctttgttgtgcaagccggctagaaagctgtaccgc
atcgcgttgctctatgatgcccaccgaccacacttcttcatcacaggtgtgtcagctggg
gagcggctacaagctctccccaaaggctgccaagagtggaccccaggagaggagacagca
gtggcagcagacaatggcctggaccactgtgtctacaaggtagcagtgggcttcagcaca
gaaatcttcggtaccttccgacagaccgttgtttttgactttggctcagaacctgtgctg
atgcagcggatcatggtagatgctgcctccattgaagacctagaacacctgatggcagcc
aggcagcagctcttgatgactgcaaagcgttgggactcttcctgtaagaccatcgtagaa
ttcgttcctaatgaaacaatggccgaattggagcgcagcctcctatcccgctatcagatc
cctctgtcagccgaccagctcttcacccagtcagtcctggacaagactctgaccaaagac
aactaccaggcccgactgcatgacctgctctacatagaggagattgcacaatacaaggaa
gttagcaagtttaacatcaaagtgaacctccagctagtcaccagctttatgctgactggc
atttctgttggagccaagtatgcccagaatggacagctctttgcacgcttcaaactcact
gaaacactttctgaggacacattggctgggcggctagtgatgaccaaggtgaattcagtc
ttggtgctgccattgggccgtgaggggttcagcagccagccaccccctggtgtcaaggag
agagtgtacgaggctgtgatcgaggagaagaccaaggactacatcttcctgaggatctgc
aaggactgctgcgacgagctggggctaattcctgacagagaaatacaggtggagctccag
ttccagctgaacagactgccactctgtgagatgcattatgccctggatcgcatcaaagat
aataccatcctttttcctgatgttggccttgttcccaccatcccatggagccccaacagg
caatgggatgagcagctggatccccgcctgaatgccaagcagaaagaggccatcctcgcc
atcaccacacccatcacgatttccttgcccccaatcctcatcattgggccctatggcact
ggcaagaccttcaccctggcacaggcagtcaagcacatccttcgccaggaccacagcagg
gtcctgatctgcacccactccaacagtgcagctgatctttacattaaggactaccttcat
ccttatgttgaagcaggcaatccgcatgccagacctctcagggtatacttcaggaaccgc
tgggtgaagacggttcacccagtggtccagcagtactgtctcatctccgggacacacgtc
actttccagatgcccacaagggaggacatcctcaggcaccgcgtggtggtggtcaccctc
agcacctcccaatacctctgccagcttgacttggagcctgggttgttcactcatatccta
ttggatgaagcagcccaggcgatggagtgtgaaaccatcatgccttttgctctggctagc
aaaaccacccgcatcgtgctggctggagaccacatgcagctcagtccatttgtgtacagc
gagtttgcgcgggagcgtaacctccacgtctcactgctggaccggctgtatgagcactac
ccccctgaatatccgtgccgcatcctcctgtgcgagaactaccgttcccacgaagctatc
atcaactacacatcagaactgttttatgatggaaagttaatggcaagtgggaagcagccc
tcccataaggacttctaccctctgaccttcttcacagccagaggagaagatgtccaggag
aagaacagtactgcctattataacaacgctgaggtatttgagattgtggagcgggtggaa
gagttgcgcaagaagtggccagtggcctggggcaagctggacgagggcagcatcggagtg
gtttcaccatacgctgaccaggtgttccgcatccgagcagagctccgaaagaagaggatg
catgaggtcagcgtggaaagggtgctcaatgttcaaggcaaacagttccgggtgctgttc
ctcagcacggtgcggacgcggcatacctgcaagcacaaacagacggccatcaaacgtaaa
gagcagcttgttgaggactcaacagaagaccttgactatggattcctctccaactacaaa
ctgctcaacacggccatcaccagagctcagtctctggttgctgttgtgggagaccccata
gcattatgctccgttgggcgctgcagaaaattctgggagcactttgtctccatctgccac
gaaaactcgagcttacatggcatcacctttgagcagatcaaggctcagctggaggccctg
gagctcaagaagacctacgtcctgaacccattggccccggagttcatccctcgtgccctc
cggcccctgcaagggcaccaccctacttcgcaggccctccatccccaccatcacccacat
cctcagcacgcacagcctgcgtccaacaagcagggcacacagcagcaacagcaccagcag
cagcagtcaccccctaaagggaagcatgcaaaccacacggagcaccttccacctgaagga
tatgtccaacccaacccagccatgctgatgggaaaccctattcgggcattcacaccaccc
ttgggtggcacgcaagctggcatgggcaagtcacctagtcccgttcagaggatagaccct
cacacaggcgccagtatcctctacgttccagctgtgtacggtggaaatatggtcatgtcc
atgcccctaccattgccttggccaggttaccagaatcgctttgctgtggaccctcgcatc
atgagccacccagcagccatggcctacaactttaatctgttgcaggcccagaatcgaggt
tcccccatcccatacagtggggtggcccatccctctccactaggaatgggccagcccagc
cctgacaaggagctacaggccgacccaatcagaaatgggaagttggaaggatgtccaaag
tcagaacagagccgtcttcagacaccagagaggaaaactgcagacatgaaggaaaaacag
ggagatttagacacaggccaaagtcgaagtctagactctcagtcagacggacttgttgga
tttcccaatgccctgctccatcgaaaagatccttcagccgcccaaaggcccctcaactac
cacctggctccacccaacccagcttttcctccacatcctgccagtggaagagcctacccc
ccacagtatcctgtctccaggcttccttatcgggtaaaccagtctcagcacccagggatg
ccccaacagagtcaacagcagcagcaacagctcagccctgcctacactggtggtagtcac
aacacttccttcttcagtggccccatacccccccacagggctgtccagtctcccactttg
gatgggccagagtctggaggggtcgaggagatgagtagctccattaggactccaatgggc
cacccaggggggcaccacccaggcctgtcacagcataacagggtcaacagctttggagag
gacggaccagatggaaacctaggagacagtctggacctccagggtcccttggctctagag
gccctgagccagcagcaacagcagcaggcagccaggctgggccagtggggggaggcacca
ggcccttttctccaaggcagcgttgcgttccctctgccccaacagcttgcccaccttgct
cagtcaggcatggctcgcttcccccatcagctgctccgagccactagttggggccttagt
gccaacatggaggatgaagcggttactcctgcctcaactgggcctcctttcaccaggtat
ccagggctcttgagagagatgcccccacaagaacagcctgaacccagggaagcagctgag
atgcagcccccacctcaatctcgcctccttcagtaccgccagtcccagccccgtgcctca
ggtgacccttcatcctctttagcagccacctccaatcatgctggccctttcccatcagga
ccttactcccacgacaccggccgcgatctccttaacgacaaccttctgaacaacccagct
ctgcagcagcagcacccggggaaccccctctatagtactggtagctacccacatcagcca
ccaacccactctgccagcccccctccctcccaggtcaaatatcttctgcaagaggcccag
tggtctcacggtggagctgcatcagtaagcccaccacagcagaaccacctgttagggaac
cagggccacggccttccctatggacttcccattatggctcaccccagtagacaggagcaa
gtccacctgatgcaacttcaccatcagcaccagcagcagcagcagcaacagcaacaacaa
cagcagcagcagcagcagcagcagcaacaacagcagcagcaacaacaacaacaacaacaa
cagcagcagcaacaacaccaacaaagtcaaggtccagaccaggagtcctaccatccactg
tcccccagaacatcagcagccacagcccttcacaatgtagatgagtatgaacccagaggt
ccaggccggcctctctatcagcggcgaatctcctccagttacccagatgaatcgtctcca
gccaacacccacaacaccctgtcccagcagccgcagccctgtacatcagatccccaagac
caccctcatccacacatacagcatcatcagcacccacatcccccctacggttacccctca
catgacctctggcccagtaatggtgggggtcccggtccgttccagaacattccatgtaac
ggagccggcacactcgctcaacaccgggaccttctggcttctaaggccctacgtcagacg
gaggagcaggtgaaggccgaggccacagcagcagcagcacagcaaacacacccgacacac
ccacactccctcaactcccttcagcaccttggacagtttcctcctctcatgcccaataac
aagcagcagcagcagcagcagcagccaccgccgccaccaccgccgcaggctcccacagag
gccagtcagggggctccaaatttaagcaaaccaccgaccatgtcctatgccagcgccctc
cgcgctccacccaaacctcgagctgttcgccctgaacaggtcaaaaagaacagcgatcct
ctctcccttctacaagagctgagtataggaagttcaaatggtagcaatgggtactattcc
tactttaaatga
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