Larimichthys crocea (large yellow croaker): 104927251
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Entry
104927251 CDS
T04659
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lco00535
]
104927251
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104927251
04091 Lectins [BR:
lco04091
]
104927251
Proteoglycans [BR:
lco00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
104927251
Glycosaminoglycan binding proteins [BR:
lco00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
104927251
Lectins [BR:
lco04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
104927251
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
I-set
Izumo-Ig
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
104927251
NCBI-ProteinID:
XP_027137128
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All DBs
Position
VIII:6997149..7009224
Genome browser
AA seq
1473 aa
AA seq
DB search
MDDSDMLISFTDPEDVLSVTIPLEEPQHPLLGGTLDLPCYFEDHTAPDPGAPTIAPLSHR
IKWSLVTKEKVTTILVALEGQVRITESYLDRVHLLGYPLTPTDASIKISELRSSDSGVYR
CEVQHGIEDSHDIVHVQVQGLVFHYRAIMGRYTLTFEKAKAACQQNSAVMASPEQLQAAF
DDGFHQCDAGWLSDQTVRYPIHDPRVNCYGDKEEHPGVRTYGVRELNETYDVYCFTEKMI
GRVFYTASAEKFTFSEAMMACSKQGAQLATTGELYLAWQGGMDVCNAGWLGDRSVRYPIN
IRRPQCGGGLLGVRTVYRHTNQTGYPLPESRYDAFCYIESPDEEGSGIIEEGSGVLSVTT
VTQSPEVFFRSTTTESEAVGEVETQQPTVVDFTFTENPTELPLPQPPNVTEIITDQIESA
TARPDIGKEPSKCFEMPPNGVVFHYRSSSNRYAFTFIEAQLACQSVGASIATLEQLQAAY
KAGYHQCDAGWLLDQTVRYPIVFPRDKCAGDLGDRPGVRSYGLRPADERYDVYCYIDGLK
GEVFHVGSAEGFTYDEAAFSCQEQNAVLASTGELYAAWKLGFDKCRAGWLLDHSVRYPIN
NPRAECGAGKSGVHSVYADPNHTSFPELDARFDAYCFRADLLLIANETGLNITDIQEALV
NLTSITDLLRPGVPSIVPPIPVETSGSGSGSAEFGSGSASGDPSVDLSGSGDMSGSGDTV
ISGDLSGSGDPSGSGDRVISGDLSGSGDLSGSGDRVISGDLSGSGDLSGTGDRVISGDLS
GSGDLSGSGDQVTSGDKTGSGDLSGSGDLSGSGDLAGSAELPSGASGFSSTDASGSALSE
EGSGITVVFSGIDSIVSGEGSVSGELQEAGEGSTQILIFPSSEAGSGMFSGSGDQSGSGS
GSGFNSAESGSSSSEESGQLSGMPSGFITTQDFSGFSGFPSGFSFGSASGHSGDLSGSGD
APILLIDGELIDASIPVTHKEHELGGGQLDFSGSGDMSGSGILSGDFSGSSSESGSGFFS
GVTFVGSGFTELTGSSSGEQEASGFLLYSSGQGSGEYLSGFGSMSFVSGSGSGMSGSEIS
GSGMSGSESSTSGEEGSVTFLTGDFMTEASGDTTLSMELGQGSVEFSGEGIGSSSGFYSG
SGDNHLFTASGTSSGASSGDLPEVVLPSPSSEWTLTESTPGPEEARSGAELSQTSGDIFV
TDSPLLAPAGMAAPPTAALPASVRAPGIVEEMESVEGGFNPCEPNPCGAAACTVEDGVAL
CHDEQHCEDGWTKFQGNCYLHFTDREMWLDAEQRCRDLNAHLVSIITPEEQQFVNSNAQD
YQWIGLNDKTMENDFRWTDGTPLQYENWRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCN
YHLPFTCKKGPVSCGAPPEVENAHMFGNRREEYPVNSIIRYQCNPGFTQRYPPVVRCKTD
GQWEKPQVECTDVKARKRIQRRSRKAAVSSQLH
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atggatgactctgatatgctgatctctttcacagacccagaggatgttctgagtgttacc
attcctctggaggagccacagcatcctctactaggaggaacgttggatctaccatgttac
tttgaggaccacactgccccagacccaggagctcccaccatcgctccactttctcatcgt
atcaaatggagccttgtcaccaaagaaaaagtcacaactattttggtagccttggaagga
caagtgcgaatcaccgaaagctacctggacagagttcacctgctgggataccctttgact
cctacagatgctagcatcaagatatctgagctgcgatccagtgactcaggagtctaccgc
tgtgaagttcagcacggcatcgaggacagccacgacatcgtccatgtgcaggttcaaggt
ctggtgttccactaccgagccatcatgggccgctacactttgacttttgaaaaggcaaaa
gcggcgtgccaacagaacagtgccgtcatggcttcacctgaacagcttcaagctgccttc
gatgatggattccaccagtgtgacgctggctggctttctgaccaaactgtcaggtatcca
atccatgatcctcgtgtgaactgctacggtgacaaagaggaacatcctggtgtcagaaca
tatggagtaagagagctcaatgagacctatgacgtgtactgcttcaccgagaagatgata
ggcagagttttctacaccgcttctgcagagaagttcaccttctctgaggctatgatggca
tgctccaaacagggagctcagttggccactactggtgaactctacctggcctggcagggt
ggtatggatgtgtgcaacgctggatggctgggagacaggagcgtccgctatcccatcaac
attcgtcgaccacagtgtggtgggggactgttgggagtgcgaactgtttaccgccacaca
aaccagacaggatacccacttcccgagtcccgctatgacgccttctgctacatagagtct
cctgatgaggaaggttcaggcatcatagaagagggcagtggtgtgctgagtgttaccaca
gtgacgcagagcccagaggtgttcttcaggagcacgaccacggagagtgaggcagtcggt
gaggtggagactcagcagcctaccgttgtggacttcacctttacggagaaccctaccgag
ctgccgctgcctcagccaccaaacgtcactgagatcatcactgatcagatagagtcagcc
accgcccggcccgacataggcaaggagcccagcaaatgctttgagatgcctccaaatggt
gtggtcttccattatcgctcaagctcaaaccgttatgccttcaccttcatcgaggcccag
ctcgcttgccagagtgtcggagcctccatcgccactctggagcagctgcaggcagcatac
aaggctggatatcaccagtgtgatgcaggatggttactcgaccagactgtaaggtatccc
attgttttccctcgagataaatgtgctggagatctgggggatcgacctggagttcggtcc
tatggtttgaggccagcagatgagagatatgatgtgtactgctacattgatgggctcaaa
ggggaagttttccatgtaggctccgctgagggtttcacctatgatgaagctgcttttagc
tgtcaagagcagaacgctgtactggcctccactggagagctttacgcagcctggaaattg
ggttttgacaagtgccgtgctggctggctactggaccatagtgtaagatatcccatcaac
aacccccgcgctgagtgtggagctgggaaatctggagtacactctgtgtacgcggacccc
aaccacacaagcttccctgaacttgatgccagatttgatgcatactgtttcagagcggac
cttctacttattgcaaatgaaactggactgaacatcacagatatccaggaggcccttgtt
aacctgacgtcaatcactgacctgttgaggcctggtgttccttccatcgttcctccgatt
cctgtggagacttcgggctctggttcaggctcagcagagtttggctcaggttctgcttct
ggggatccctctgtagacttgtctggctctggagacatgtccggttctggagacactgta
atctctggagatctttctggttccggagacccgtctggttctggagaccgagttatctct
ggagatctgtctggctccggagacctgtctggttctggagaccgagttatctctggagat
ctttctggctctggagacctgtctggtactggagaccgagttatctctggagatctttct
ggctccggagacctgtctggttctggagatcaggtcacatctggagataaaactggttct
ggagacctgtctggttctggagacctgtctggttctggagacctggctggcagtgctgag
ctgccaagtggagcatcaggtttcagcagtacagatgcgtctggatcagctctcagtgaa
gaaggatcaggcattaccgttgttttttcgggcattgacagcattgtctctggagagggc
tcagtttcaggagaactccaagaagccggagagggaagcacacagatcctaatctttcct
tcatctgaagcaggctctggaatgttcagtggtagcggggaccagtccggttctggctct
ggatctggtttcaactctgcagagagtggctcttccagctctgaggaaagtgggcaatta
tctggcatgccgtctggcttcattacaacccaagacttttccgggttcagtggattccca
tcaggattctcctttggaagtgctagtggacactcaggggacctttcgggaagtggagat
gctccaattttactgatagatggtgaactgatcgatgcatccatccctgttacccacaag
gagcatgaacttggtggaggtcaattggacttcagtggctctggagacatgtcaggatct
gggattctcagtggtgatttcagtggctcgtcctctgaaagtggctctgggttcttctca
ggtgtgacctttgtggggtcagggttcaccgaacttacagggtcatcctctggagagcag
gaggcctcagggtttttactatacagctctggacagggaagtggtgaatatttgtctgga
tttggaagcatgagtttcgtctctggatcaggatcaggaatgtctggatcagaaatttct
ggatcaggaatgtctggatctgagtcctcaacaagcggagaagaaggaagtgttacattc
ttgactggggattttatgactgaggcatccggagacaccacactgtctatggagcttgga
caggggtcggtggagttcagcggagaaggaattggtagcagcagtggcttctattctggc
agcggagacaaccacttgtttacagccagtggcacttcttcaggcgcttcctctggagat
ttgccagaggttgtgctgccctctccgtctagtgagtggacactgacagagagcacccca
ggaccagaggaggcccgtagtggagctgaactgtcacaaacctccggtgacatctttgta
actgacagtcctttgcttgccccagcaggaatggctgcacctcccactgcagctttacca
gcctctgttcgggcacctggcatagttgaagaaatggagtcagtggagggtggttttaac
ccatgtgaaccaaacccctgtggtgctgctgcatgcacagtagaggatggggttgctctc
tgccatgatgagcagcactgtgaagacggttggactaagtttcaggggaactgctacctg
cacttcactgacagagagatgtggctggatgcagagcagcgctgccgggacttgaatgcc
cacctggtcagcatcatcactccagaggagcaacagtttgtcaactcaaatgcacaggac
taccagtggatcgggctgaacgacaagacaatggagaatgacttccgctggacagatggc
acaccactgcaatacgagaactggaggccgaaccagccagacaattacttcaactctgga
gaagactgcgtggtgatgatctggcacgagaacggccagtggaacgacgtgccgtgcaac
taccacctgccatttacctgcaagaaaggcccagtctcctgtggcgccccaccagaggtg
gagaacgcccacatgtttggtaacaggagggaggaataccctgtcaactccatcatccgg
tatcagtgcaacccagggtttacacaacgctaccctccggtggttcgctgtaaaacagac
ggacagtgggagaaaccccaggtggaatgcactgatgtgaaagccagaaaaagaatacag
cggaggagcaggaaagcagcagtgagcagccagcttcactaa
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