Larimichthys crocea (large yellow croaker): 104927343
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Entry
104927343 CDS
T04659
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104927343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104927343
03036 Chromosome and associated proteins [BR:
lco03036
]
104927343
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104927343
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104927343
mRNA degradation factors
5'-3' decay
Decapping complex
104927343
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104927343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
104927343
NCBI-ProteinID:
XP_010739702
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All DBs
Position
XIII:29908717..29917008
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AA seq
485 aa
AA seq
DB search
MATARTANPASMIGLNKPANGQFRGQTKPAGQQSGLFGTAQQLGPTQKMSSIPQSSGGIK
FGDDWKKCLELPPKDTRMKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDNIQAIVMVPTRELALQVSQISIQI
GKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLMKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIIAFLPRERQILLYSATFPISVQKFMSKHLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRIGRSGR
FGHLGLAINLITSDDRYNLKNIEDQLVTEIKPIPGSIDKSLYVAEFHSVDPDEDGIEGGA
KNKEL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcatcaatgattggattgaacaaaccagcaaat
gggcagttcagaggacagactaagccagctggacaacaatcaggactctttggaactgcc
cagcaactcggtcccacccagaaaatgagcagcattccccagagcagtgggggcatcaag
tttggtgatgactggaagaagtgcctggaacttcctccaaaagataccaggatgaaaact
tcggatgtgacatcaactaagggaaatgaatttgaagactactgcctaaagcgggaactt
ctaatgggaatctttgaaatgggatgggagaaaccgtcccctatccaggaggaaagcatc
cctatcgctctgtcaggcagagatattctggctcgggccaagaatggcacaggaaaaagt
ggagcctacctcatcccactcctggaaagaatagacctgaagaaggataacatccaggcc
atagtgatggtgccaacaagagagttggccctacaggtgagccagatcagcattcagatc
ggcaagcacctcggaggggtcaaggtcatggcgacgacgggtggcaccaacttgagggat
gatatcatgcgtcttgatgagatagtgcatgtagtgattgcaactccaggcaggatacta
gacctgatgaagaagggtgtggcaaaagtggataaggtccaaatgatggtgatggatgag
gcagataagttgctgtcccaagactttgtggtgctgattgaagatattatcgccttcttg
ccaagagaacgacagatcctgctttactctgctactttccccatcagtgtccaaaaattc
atgagcaaacatctgaagaaaccttatgagatcaacctgatggaggaactgacgttaaag
ggcatcactcagtactatgcctatgtgactgaaagacagaaggtccactgtctcaacaca
ctgttttctaggcttcagatcaatcagtcgatcatcttctgtaactccacccagagggtt
gagcttctggccaagaaaatcacccaactgggctattcgtgcttctacattcatgcaaag
atgatgcaggagtacaggaaccgtgtgttccatgacttcaggaatggattgtgcagaaac
ctggtctgcacagacttattcactcggggaatcgacatccaggcagtaaatgtggtcatc
aattttgacttccccaaaagtgcagagacgtacctgcatcgcattggcagatcggggcgt
tttggtcacctgggtctggccatcaatctgataacttcagatgaccgctacaacctgaag
aacattgaggatcagctggttactgaaatcaagcccatccccggcagcatcgataagagc
ctatacgtggcagagtttcactctgttgacccagatgaggatggcatcgaaggcggagcc
aaaaacaaggaactgtga
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