| Entry |
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| Symbol |
col1a2
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| Name |
(RefSeq) collagen alpha-2(I) chain isoform X1
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| KO |
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| Organism |
lco Larimichthys crocea (large yellow croaker)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:lco00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104927463 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104927463 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104927463 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:lco00536]
104927463 (col1a2)
Glycosaminoglycan binding proteins [BR:lco00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
104927463 (col1a2)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
XIII:complement(47787832..47805846)
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| AA seq |
1355 aa
MLSFVDTRILLLLAVTSYLASCQSVRVKGPRGDKGPRGDRGPQGPNGKDGKPGLPGPPGP
PGPPGLGGNFAAQYDGSKAPDPGPGPMGMMGARGPPGPPGPPGSQGHTGHPGEPGEPGQP
GPVGARGPPGPAGKAGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYTGLD
GRKGEPGAAGPKGEPGAHGAAGTPGLAGARGLAGERGRAGPAGPAGARGADGNVGPAGPA
GPLGAAGPPGFPGGPGPKGELGAAGAVGPSGPQGARGEPGPNGAVGPVGPPGNPGNNGLN
GAKGASGTPGVAGAPGFPGPRGGPGPQGPQGAAGQRGLAGDPGVQGVKGDAGPKGEPGNS
GAQGPPGPQGEEGKRGPTGELGATGVAGNRGARGAPGGRGLPGAEGRTGPVGMPGARGST
GAAGPRGPPGDAGRAGEPGAAGLRGLPGSPGSSGPTGKEGPAGPAGQDGRTGPPGPTGPR
GQPGNIGFPGPKGPSGEPGKPGEKGATGPAGLRGAPGPDGNNGATGPGGVVGNAGEKGEQ
GPAGAPGFQGLPGPAGPAGEAGKPGDRGIPGDQGLAGAAGGKGERGNPGAAGASGPQGPM
GSRGPAGAPGSDGGKGEPGSAGAAGAAGHQGPGGMPGERGAAGPPGGKGEKGEPGHRGPD
GNSGRDGARGMPGPAGPPGPTGANGDKGESGAFGPAGPSGPRGAPGERGEVGPAGAAGFA
GPPGADGQTGARGERGPSGGKGEVGSAGPAGPAGQSGPAGPTGAAGPTGARGETGPAGLT
GFPGAAGRVGAAGPAGIVGPPGAVGPAGKDGPRGLRGDSGPAGPSGEQGMVGPPGPAGEK
GPSGESGPPGAPGVPGSGGPLGLQGFVGLPGARGDRGSPGGAGALGEAGRVGPAGSPGAR
GPPGNIGLPGMTGPQGEAGREGNPGNDGPPGRPGIPGFKGDRGEPGSPGAMGLAGLPGPA
GPTGAVGRAGGRGEAGPGGPAGPVGAAGARGAPGPAGPRGEKGVAGERGERGMKGLRGHA
GLQGMPGPSGPSGDTGVAGPHGPAGPRGPAGPHGPAGKDGRAGGHGGMGAPGARGPPGYV
GPSGPPGSPGLPGPPGPAGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLLT
PEGSRKNPARTCRDIRLSHPEWTSGFYWIDPNQGCTNDAIKVFCDFTTRETCIYAHPESI
AQKNWFRSTEAKKHVWFGETINGGTEFTYNDETISPQSMATQLAFMRLLSNQASQNITYH
CKNSVAYMDGESGSLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEY
RTNKPSRLPILDIAPLDIGGAEQEFGLDIGPVCFK |
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| NT seq |
4068 nt +upstreamnt +downstreamnt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaatcggtgagagtcaagggtcccagaggagacaaaggacctcgaggtgacagg
ggtcctcaaggacctaatggaaaggatggcaaacccggactccctggcccccctggcccc
cctggtccccctggactcggaggaaactttgctgctcagtacgatggttcaaaagctcct
gatcccggccctggacccatgggtatgatgggagctagaggcccccctggacctcctgga
cctcctggatctcagggacacaccggacaccctggtgagcccggagagcctggacagcct
ggccccgttggtgctcgtggcccccctggacccgctggcaaagctggagaggacggtaac
aatggcagacctggtaagcccggagatagaggtgcccccggccctcagggtgctcgtgga
ttccccggaacccctggacttccaggaatgaagggacacagaggttacactggtctggat
ggacgcaagggagagcccggtgccgctggccccaagggtgagcctggtgcccacggagct
gctggaacccctggtctggctggagctcgtggtctggctggtgagagaggacgtgctggc
cctgctggccctgctggtgctcgtggtgctgacggcaatgttggacctgctggccctgct
ggtcctcttggtgctgctggtcctccaggtttccccggtggtcccggacccaagggagag
cttggtgccgctggtgctgttggcccaagtggacctcagggagcaagaggagagcccggt
cccaatggtgctgttggccccgttggtccccctggtaaccctggtaacaatggcctgaat
ggagctaagggagcttctggtacccccggtgttgctggagctcctggcttccccggacca
agaggtggacctggaccccagggaccccagggtgctgctggacaaagaggccttgctgga
gatcctggtgttcagggtgtcaagggagatgccggtcccaaaggagagcctggtaactct
ggagctcaaggaccccccggacctcagggtgaggagggcaagagaggacccactggtgag
ctcggtgctactggagtcgctggcaaccgtggagctagaggtgctcctggcggtcgtggt
ctgcctggcgctgagggaagaactggcccagttggtatgcccggtgcccgtggatccact
ggtgcagctggacctcgtggaccccctggagatgctggtcgtgctggtgagcctggcgct
gctggtctcaggggtctcccaggaagccccggaagctctggacccacaggaaaggaggga
cctgctggtcctgctggacaagatggccgcactggacctcccggcccaactggacccaga
ggccagcccggaaacattggtttccccggacccaagggaccatctggtgagcctggcaag
cccggagagaagggagccactggccccgctggactgagaggagcccctggacctgatggc
aacaatggagcaaccggacccggtggagttgttggtaatgctggtgagaagggagaacag
ggacctgctggagctcctggtttccagggactgcctggccccgctggacctgctggagag
gctggcaagcccggagacagaggtatcccaggagaccagggacttgctggagctgctggt
ggcaagggagagcgtggaaaccctggtgctgctggagctagtggacctcagggaccaatg
ggatcccgtggacccgctggagcccctggatctgatggtggcaagggagagcccggttct
gctggagctgctggtgccgctggacaccagggacctggtggtatgcccggtgagcgtgga
gctgctggtccccctggaggcaagggagagaagggagagcctggacacagaggacctgac
ggtaattctggcagagatggtgcccgtggtatgcccggacctgctggacctcctggaccc
actggagccaatggtgataagggtgagagcggtgccttcggacctgctggaccctctgga
cctcgtggagcccctggtgagcgtggagaggttggacctgctggagctgccggattcgct
ggaccccctggcgctgacggtcagaccggagcaagaggagagcgtggaccttctggtgga
aagggagaagttggctccgctggccctgctggacccgctggacagtctggacctgctggc
cctaccggtgctgctggacctactggtgcccgtggagaaactggccccgctggtttgact
ggtttccctggtgctgctggcagagttggtgctgctggtcccgctggtattgttggacct
cctggtgctgttggtcccgctggtaaggatggtcctcgtggactccgtggtgattctggt
cccgctggtccttctggagagcagggcatggttggaccacctggtccagctggagagaag
ggacccagtggagagtctggaccccctggtgctcctggtgtccctggttccggtggacct
cttggtcttcagggattcgttggtctgcctggtgctagaggagatcgtggttcacctggt
ggtgctggtgctctgggagaggctggtagagttggacctgctggttcccctggagcccgt
ggtcctcctggaaacattggcctgcctggtatgactggacctcagggagaggctggacgt
gagggtaaccctggtaacgatggacctcctggccgtcctggtattcctggattcaaggga
gaccgtggtgagcctggatcacctggtgccatgggacttgctggtctccccggacctgct
ggacccactggagctgttggcagagctggaggccgtggagaggctggcccaggaggtccc
gctggacctgttggcgccgctggagctagaggtgcccctggacccgctggaccccgtggt
gagaagggagttgctggagaaagaggagagagaggcatgaagggtctgcgtggacatgct
ggtctccagggaatgcccggaccttctggaccttctggtgatactggagttgctggacct
cacggacctgctggacccagaggacctgctggaccccacggacccgctggtaaggacggc
agagctggcggccatggtggtatgggtgctcctggtgctcgtggacctcctggatacgtt
ggaccttctggtccccctggatctcctggtctgcccggacctcccggccccgctggtggt
ggatatgatgtgtccggatacgatgagtacagagctgatcagcctgctctgagagccaag
gactacgaggtcgatgccaccatcaagtccctcaacactcagatcgagaacctgctcacc
cctgagggatccaggaagaaccctgcccgcacctgccgtgacatcagactcagccacccc
gagtggaccagtggattctactggattgaccccaaccagggttgcaccaatgacgccatc
aaggtcttctgcgacttcaccacccgcgagacctgcatctatgcccaccctgagagcatt
gcacagaagaactggttcagaagcaccgaggccaagaagcacgtctggttcggagagacc
atcaatggcggtactgagtttacctacaacgatgagaccatcagcccccagagcatggcc
acccagctcgccttcatgcgcctgctgtccaaccaggctagccagaacatcacctaccac
tgcaagaacagcgttgcctacatggatggtgagagcggaagcctgaagaaggctgtggtg
ctccagggctccaacgatgtggagctgagagccgagggcaacagccgcttcaccttctcc
gtgctggaggatggctgcactagacacactggtgagtggagcaagacagtgattgagtac
agaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggtgga
gctgaacaggagtttggtttggacattggcccagtctgtttcaaataa |
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