Larimichthys crocea (large yellow croaker): 104927490
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Entry
104927490 CDS
T04659
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03250
Viral life cycle - HIV-1
lco04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104927490 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
104927490 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104927490 (samhd1)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104927490 (samhd1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
104927490
NCBI-ProteinID:
XP_010739883
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Position
XV:20694369..20706298
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AA seq
625 aa
AA seq
DB search
MANRKRPFDAALTPDDNFKTPEKRVSVVRLQESDYTQWGVEETCRYLRREALGEWEETFK
AQKITGVGLRYLTDADLEKIGIKCLGDRLKILHSLRKLWHMEAEPNKVFNDPIHGHVELH
PLLIKIIDTPQFQRLRYLKQLGGTYFVFPGASHNRFEHSIGVGHLAGRLVQALHYKQPEL
LISRRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKARPGTTWKHEKASLAMFDYLVNDNG
LKPVMEQHGLVLPEDLDFIKEQIAGPLDANAAQDQTWPYKGRPEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIQNNFDYRRFLKFARVCKVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVGNIIETMITEAFLKADKHIKIEGSGGKLFTLSTAIDDMEAYTKLTDHVFE
QILNSSSPELAEARQILRNVTCRRLYKCLGQTQADKPISVTQEKTHSWEADLARSTPQSG
TQGVSLQPEDFVVNVISLDYGMKEKNPINNVRFYCKDDITKAIQIRKNQVSKLLPEQFAE
QLIRVYFKKTDDRSLEAAKKHFVQWCMDMNFSKPRDGDIIAPELTPLKTSWSNNNEGEGD
EGSSSRAVNHAAVNGQQKAKMQLFK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgaaaacgaccatttgatgcagctttgacccccgatgacaatttcaaaaca
ccagagaagagagtgtcagtggtccggctgcaggagtcggactacacgcagtggggtgtg
gaagaaacgtgtcggtacctccgaagagaagctcttggagaatgggaagaaacatttaaa
gcacaaaaaatcacaggtgttggcttaaggtatctcacggatgcagatctggagaagatt
ggcataaagtgcctcggtgaccgtctgaagatcctacacagcctcaggaagctgtggcac
atggaagctgagccaaataaggtgtttaatgatcccatccacgggcatgtggagttacac
cctcttctcatcaaaatcatcgacacacctcagttccagaggctccgatacctcaagcag
ctaggagggacatactttgtcttccccggagcatctcacaaccggtttgagcactccatt
ggggtgggtcacttggcaggacggcttgtacaagctctgcattacaagcagccagaactc
ctcatctctcgcagagacatcctttgtgttcagatcgctgggctctgccatgacctggga
cacgggccgttctcccatatgtttgacgggatgttcatccccaaagcacgtccaggaact
acctggaagcatgagaaggcctctctagccatgtttgactacctggtgaatgacaatggc
ctgaagccggtcatggagcagcatggcctggtgctgcctgaggatctggacttcatcaag
gaacagattgctggaccactggacgctaatgcagctcaagaccagacatggccgtataaa
ggccgtccagaagacaagtccttcctctatgaaattgtggccaacaaaagaaatggcatt
gatgtggacaagtgggactactttgccagggactgctaccacctgggcatccagaacaac
tttgactatcggcgcttcctaaagtttgccagagtgtgtaaggtggatggacagaagcac
atctgcactagagacaaggaggtgggcaatttgtatgacatgttccacacaaggaactgt
ctccacaggagagcctaccagcacaaagtgggcaacatcatagagactatgatcacagag
gcctttttaaaagcagacaagcacatcaagattgaaggctcaggagggaagctgttcact
ctctccacagccatagatgacatggaggcctacaccaagctgacagatcatgtgtttgag
caaatattgaactcctcctccccggagctggctgaggcacgacagattctacgcaacgtc
acctgtcgacgcctctataagtgtttgggccaaactcaggcagacaaacccataagtgtc
acccaggagaagactcactcctgggaagcagatttggctcgatccacccctcagagtggc
acccagggtgtgagccttcagccagaggactttgtagtcaatgtcatttctttggactat
gggatgaaggaaaagaaccccatcaacaatgtgcgtttctattgcaaagatgacataacc
aaagccatacagattcgcaaaaaccaggtgtctaagcttcttccagagcagtttgctgag
cagctgatcagagtttacttcaagaagacagatgacaggagcctggaggcagctaagaag
cactttgtccagtggtgcatggacatgaacttttcaaagcctcgggatggagacataatc
gcacctgagctgactcctctgaaaaccagttggtcgaacaacaacgaaggcgagggtgac
gaaggtagcagttccagagcagtaaaccatgctgctgtaaatggacaacagaaagccaaa
atgcagctttttaagtaa
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