Larimichthys crocea (large yellow croaker): 104927676
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Entry
104927676 CDS
T04659
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03030
DNA replication
lco03410
Base excision repair
lco03420
Nucleotide excision repair
lco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104927676 (rfc1)
03410 Base excision repair
104927676 (rfc1)
03420 Nucleotide excision repair
104927676 (rfc1)
03430 Mismatch repair
104927676 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lco03032
]
104927676 (rfc1)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104927676 (rfc1)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104927676 (rfc1)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104927676 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
RuvB_N
AAA_33
AAA_17
BRCT_2
Rad17
AAA_14
AAA_18
AAA_16
RNA_helicase
nSTAND3
AAA_7
NTPase_1
AAA_19
TIP49
Motif
Other DBs
NCBI-GeneID:
104927676
NCBI-ProteinID:
XP_019131845
LinkDB
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Position
X:complement(7036934..7045469)
Genome browser
AA seq
1166 aa
AA seq
DB search
MDIRRFFQPTAAKPAAAPHGDNNTDQKKKKKKKSLSSDEDVKNKNKQSAKVKNSKSDEKQ
KDGDKKRKKHGVIESDSEDEAITRKSKKSPKEKPKKANETETPPKKDPVQYVSETDSDSD
NFQSLKKVSKPKQNGTAKPTKSEAESARPGTKGGVKSPVSTQKKPAVKSPITPKSAPPPQ
PKKTPTSVMDYFGSATIHRSDKKLVASIKRKAPVHDAEDLISDEQIARELQMDEDMELEK
QVHEDEEFARTLAMLDEEPQAKKARKGSDEKPSPAAGSTSSPSKTRQRKSDVSEDVISPS
PKKNPVPAKTSSKLAMMKKRDEEKDAGPKSKTPASPVKMQISPKKEKLTPKTGATPSSVK
TSPKKPESTSTSPDDAEKRKGNASAYRNFLNRDGPRALGSKEIPQGAENCLEGCMFVVTG
VLESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDGGVSKLEKAESFGTTILDEDGLL
ELIRTKPGKKSKYEIVAEAEAKASKTRTPPSKKNTPKSQKISPSKGNSRSPQTPSPSKTG
LAQGHAARTKHGGTPPGRGSGHTARRDLGLSSSTSSSAPAGPPSSSGEGASLLWVDKYRP
RSLKTVIGQQGEQSCANKLLRWLQSWHKHHGGGASKPPAARFGKFGGGKDDGSGFKAALL
SGPPGVGKTTTAALVCEELGFSFVEMNASCTRSRNNLKEVVAESLNNTSIENFYKGTSQT
VTSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHQKIRSLANYCFDL
RFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSARDKVMTY
DQCKSDAARARKDMKMGPFDVCRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYL
QVRPKAASGDPKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYASVLPGELMR
GYMSHFPTFPSWLGKNSSTSKHSRIVQELSSHMCLKTMSSRQAVNLDYLYYLRQALLSPL
QRHGAEGAAEAVQLLDDYQLIKEDVDSIMEISVWGGQPDPYSKLDSKVKAAFTRTYNKEV
HLTPYSLQVVKKGRRGGGGESELGGEDVDEVQESEEEGDSLKTDAMIKQKKARATKEVKK
EKEDSGRGKGKGTGKGTGKGKGKAKK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttcttccagccgactgcagccaaacctgcagccgccccgcatgga
gacaacaacacagaccagaagaagaagaagaagaagaagtctctgtcttcagacgaggac
gtgaagaataaaaacaaacagagcgccaaggtcaaaaactccaaatcagacgagaaacaa
aaggacggtgacaagaaacgaaagaagcacggagtcattgaatcagactcggaggatgag
gcgataacgaggaagtcgaagaaatccccgaaagagaaaccgaagaaggcgaacgagacg
gagacgcctcccaaaaaagatcctgtgcagtacgtctctgaaacagactcggacagcgac
aacttccagtccttgaagaaagtctccaaaccgaagcagaacggcacggccaagccgaca
aagtccgaagcagagagcgctcgaccgggaaccaaaggcggggtgaagtctcccgtctcc
acgcagaagaaacctgccgtgaagtctcccatcacgccaaagtcggcaccgcctcctcag
cccaaaaagacccccacctcggttatggactacttcggcagcgcgacgattcatcgctcg
gataagaagctcgtggccagcatcaaacgaaaggctccggttcacgacgctgaggatctg
ataagcgatgagcagatcgccagagagctgcagatggatgaggacatggagctggagaag
caggtccacgaggacgaggagtttgcccgaacactggccatgctggacgaggagcctcaa
gcaaagaaggctcgtaaaggctctgatgaaaaaccgtccccggctgctggcagcacgagc
agcccgtcaaagacgagacaaaggaagagcgacgtgtcggaggacgtgattagcccgtct
ccgaagaagaacccggtccccgccaaaaccagctccaagctggccatgatgaagaaaaga
gatgaagagaaagacgccgggccgaagagcaagacgccagcatcgccggtaaaaatgcaa
atctctcccaagaaggagaagctgacgcctaaaacaggagccacgcccagctcggtgaag
acttctcccaagaaacccgagagcacaagtacgagtcccgacgacgcagagaagaggaag
ggcaacgcttcagcttacaggaacttcctcaacagagacgggccgcgagctctcggctcc
aaggaaatcccacagggtgcagagaactgtttggagggctgcatgttcgtggtgacgggc
gtcctggagtccatggagagggatgacgccaaatccctgatcgagcgctacggagggaag
gtgacgggcaacatcagcaagaagaccacgtacctggtgcagggcagagacggcggagtg
tcgaagctcgagaaggcggaaagttttggtaccacgatcctggatgaggacggtctgttg
gagctgatcagaaccaaaccagggaagaagtccaagtatgagatcgtcgcagaggccgag
gccaaagcttcaaagaccaggactccccccagcaagaaaaacacccccaaatcccagaag
atctctccctccaagggtaactccaggtcccctcagacaccgagcccctcgaagaccggc
ctggcacaaggccacgccgcccgaacaaaacacggcggcactccacctgggagaggctcg
ggtcacacagcccgaagggacctgggcctttcctcctccacgtcttcatcagcacctgct
ggaccgccatcgtcgagcggagagggagccagcttgctgtgggtggacaagtaccgcccg
cgctctctgaagaccgtgatcggccagcagggagagcagagctgtgccaataagctgctg
cgctggctgcagagctggcacaaacaccacggcgggggcgcgtcgaagccaccagcagcg
aggttcggtaagtttggaggagggaaggacgacggatcaggattcaaagctgctcttctc
tctggacctccgggggtcgggaagaccacgacggccgccctggtctgtgaggagttgggc
ttcagcttcgtggagatgaacgccagctgcactcgcagcagaaacaacctgaaggaagtc
gtcgcggagtcgcttaacaacacgagcatcgagaacttctacaaaggtacgtctcagaca
gtgaccagcaaacacgtcctgatcatggacgaggtcgacggcatggccggcaacgaggac
cgcggaggaatccaggagatgatcggcctgatcaagaattcaaagattcccatcatctgc
atgtgcaacgatcgcaaccaccagaagatccgatcgctggcaaactactgcttcgacctg
cgcttccagaggccgcgagtcgaacagatcaagggagccatgatgtcgctcgctttcaaa
gagggaataaagatcccgcctccggctctcaacgaaattatcctcgcctccaatcaggac
gtccgacaggtgatccacaacctgagcatgtggtcggccagggacaaggtgatgacgtac
gaccagtgcaagtccgacgcggcgcgagcccgaaaggacatgaagatggggccgttcgac
gtctgcaggaaggtgttcgccgccggggaggagaccgcccacatgagcctcatcgacaag
tcggacctcttcttccacgactactcgctcgcgccgctctttgtccaagagaactacctg
caagttcgaccgaaggccgccagcggcgatccgaagtctcacctcgtgttgctcagcaag
acggccgactccatctctgacggcgacctcgtggacagacggatccgctcgggacagaac
tggtcactgctgcccactcaggcgatctacgccagcgtgttaccgggcgagctcatgaga
ggctacatgagtcacttccccaccttccccagctggctcggcaagaactcctccaccagt
aaacattcccgcatcgtccaggagctgtcgtcgcacatgtgtttgaagacgatgagcagc
agacaggctgtgaacctggactacctgtactacctgcggcaggcgctgctgagcccgctg
cagaggcacggagcggagggcgccgctgaagccgtgcagctgctggacgactaccagctc
atcaaggaggacgtggacagcatcatggagatcagcgtctggggcggacagccggacccg
tactccaaactggactccaaggtgaaggccgcgttcacgcggacctacaacaaagaagtc
cacctgacgccgtactccctgcaagtggtgaagaagggacgccgtggtggtggcggggag
tcagagctgggaggcgaggacgtggacgaggtgcaggagtctgaagaggagggggacagc
ctcaaaacggacgccatgatcaaacagaagaaggccagagccaccaaggaggtgaagaag
gagaaggaagactccgggaggggcaaaggaaaggggacgggcaaggggacgggcaagggg
aaaggcaaggccaagaaatga
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