Larimichthys crocea (large yellow croaker): 104927841
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Entry
104927841 CDS
T04659
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104927841 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104927841 (exosc1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104927841 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104927841 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
104927841
NCBI-ProteinID:
XP_010740317
UniProt:
A0A0F8AMQ4
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Position
X:complement(23653485..23657108)
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLKKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSESGAQMVPISWCEMQCPQTHVKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagtgtagaagactgtatt
cccggcacgggggtgtacctgcgacatggctacatatattcctcactagcaggctatgtg
ctcaagaaaaatgaaggagaggagttaccagtgatctcagtagtcagggaaacagaagca
caactattaccagatgtaggagcaatagtcacctgtaaggtgacgagtatcaaccccagg
ttcgccaaggttcacatcctttatgttggctccacgccactgaaggatcgcttcagaggg
actatcagaaaagaagatgtgcgcgcaacagagaaagacaaggtggagacgtacaaaagt
ttcagacccggagacatcgtcttggcgaaagtgatctctctcggtgacgtgcagtctaac
tacttgttgacaacagcagagaatgaactgggagtggtggtggcacacagtgaatcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccgcagacacacgtcaaagag
ttccgcaaagtggcgcgagtgcagccggaatacctgcaggcctga
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