Larimichthys crocea (large yellow croaker): 104927969
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Entry
104927969 CDS
T04659
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
104927969 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lco03036
]
104927969 (chd8)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104927969 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
104927969
NCBI-ProteinID:
XP_010740471
LinkDB
All DBs
Position
X:complement(14270041..14287611)
Genome browser
AA seq
2583 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDAIPDDSFSQGSSDPVEEALKLALGQVDPPAEPELTVNTGLNV
PVAAPTIPDPVPVQVPTQQQLPVVTAQTVSIAAAPAVAPAPVDTVPQIQAQTTIPIVSNT
SVATSSTVLLSSPLTVSSSPVTTTATTQLTQITHQLTPQQLAAITQQAGGKIVILKGPQG
QAQVLQTVSGATGQTTGKVIRVLSGTPLKPGMSILQGGTVLNQASPGQAQVKVGAAGVQR
LLQSPNGPVKQMLLTSMPQHTQGQTLQVQIPAHTQMAQGQTQVQVQPQTAQIQVQQQGQA
AQIQVQAQGQVQLQPAMQGQTQGGEAKRITLVLQQPSQAGSAAQAGQAQQQVTQIQQVQT
AQAGQQPQAPTRLVLGQLPGGKLVLQGSQLAALTQARAAGQAGGQPKVLTIQLQVQQQPN
QQGGVKYQLVSGAGSTGSPQVLQISQGQGGQRVAVPLKMLLQPQTSSATSSGGTVSVVKV
INTSAAGPSTTTTTPSQAIRITKAPGEPASVRRVEILCKQEKANRIVAEAIARAKARGEK
NLPRVLNQDELPTTQTSPETGGTVTVVSAAKKKTSGGGSKKKSPVAGGTTPKTAGGADKK
SKVKTPGGTTGVAGCTVIPGSGNKSKSKTKTNTITLVGAKKRKRNASSDHSDGELSPASP
ATLEDDLTTKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVTTTAAAVASISGGTAAQL
KQEMELDVDGQPSMQFFVENPSEEDAAIVDKVLSMRLTKKEVTQGQYTNVEEFFVKYKNY
SYLHCEWASLEQLEKDKRIHQKIKRFKTKHAQMRHIFQEDEEPFNPDYVEVDRILDVSHS
VDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVGDFGKIQNRQPRLKRAARPSASS
WKKLEESREYKNGNTLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITLLSEIYA
AGLQGPFLVIAPLSTITNWEREFCTWTNMNAIVYHGSLASRQMIQQYEMYCKDDKEHLIP
GAYKFDALITTFEMVLSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLL
TGTPLQNTVEELFSLLHFLEPAQFPSETEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKE
DVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSLGANSNSNVPNLLNTMMELRKC
CNHPYLINGAEEKIVAELREVYDPLAPDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLI
FSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLK
LGLDRAVLQSMSGNKDSNVNGIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQI
LQRRATTITIESEGKGSTFSKASFVASENRNDIALDDPEFWQKWAKKADIDMDTINRKNT
LVIDTPRVRKQTRQYSTLRGEGGDLSDLDSDEEYPPSNSRQSRSSRRADRHSGGGYGRTD
CFRVEKHLLVYGWGRWRDILSHARCKRRLSERDVETICRVILVFCLLHYRGDENIKSFIW
ELITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTLLLDD
SYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHSDSVLKGANIRDVDIWMPEMEQQEVPAGW
WDTEADRSLLAGVFKHGYEMYTTMRADPCLSFLERAGRPDDKAIDAEQHTGDAEMGEEAD
YDKYSEDPEFKPASRHAKDLFEEPDSMTVDDEISVDDKAGPVITEIISTTTTTQSGPCDW
PSSSSLTARLRRLITAYQRSYRQEQLKIEAEAKGDRRRRRCEQASKLKEIARQERQQRWT
RREECDFYRVVSTFGVEKIKKEPGLPEGRDPEFDWNRFRTFARLDKKTDESLSRYFRSFV
AMCRRVCHLRPGHGEDPSQLSQTVAPITEERASRTLYRISLLRRLRERVLPHPSLEERLT
LAPTSSELPTWWNIPDHDRQLMLGASLHGVSRTELSIFSDPQFTFSQAREEFIQNQQAPP
PPPPPQAPLIMPLSLLKAERDMSGMREERAEEDGRLLGGQIGDLQGTPLSHHDGKARGQG
WGMKRSRERVGKTGGGRKGEGGSDSDSDSDSGSSSSERSGSSDESGESEEEGAGMKLCDV
DEDNSLLSMTTSHDGLPPPDPLRLDWPKDRVLINRLDSLCTLVLTGQWPSGRRYVSEAQL
NPSSELAGDEMAYTRVIRKSGIMPGGPGAEGDDGEFTVKLLKEEGLKLTFSKQALMPNGS
AGESSRKKRKDQELSDPDGLDPLERTPRRRDPPTWLKENPEYEVEGDMLELLVNRSKRKR
RRRADKALTGSEKVKVINMRTGKKVGAAFCPMLQDLREYLEENPDNAVAPDWSETVRNSG
FLPETFFHRLLTEHSEIPKKSRRRHHHHHHHHHHHHHTPDPTPEDPNIDGVEEETLVSDG
AYMMDEEDLETSHHFLTSADFDVKMECGDSLSQGDYDSSDQEALLEDVIIAQKDSDSSSS
SED
NT seq
7752 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgaggacacacctctgtttaacctggatgccata
ccggatgattccttctctcagggctcctcagaccccgtggaggaggcccttaagctggca
ttgggacaagtggacccaccagccgagcctgagctcacggtcaacacaggccttaacgtt
cctgtagcagctcccaccatcccggaccctgtccctgttcaagttcccacacagcagcaa
ttgccagtggtgaccgctcagactgtttccatagccgcagctcccgctgtagcccctgcc
cctgttgatactgtacctcagatccaggcccagaccaccatacctattgtaagcaacacc
agcgtggccaccagtagcactgtcctgctgagctcacctctgactgtttccagctctccg
gtcaccaccactgccaccacgcagctcacgcagataactcaccagctcactccacagcag
ttagctgccattacgcagcaggctggtggtaaaattgtcattctcaaaggcccccagggt
caagcccaggtgctgcagactgtatcaggagctacaggccagaccactggaaaggtcatc
cgtgtgttgtctggcactcctcttaaacctggaatgtccatactgcagggggggacagtt
ttgaatcaggcgagcccaggacaagctcaagtcaaggtgggtgctgcaggggtgcaacgc
ctgctgcagtctcccaatgggccagtgaaacagatgctgctgacctccatgccccagcat
acgcaaggccagacgcttcaggtgcagatcccagcccacacacagatggcccaaggccag
acccaagtccaagtccagccgcagactgcccagatccaggtacagcagcaaggccaggca
gctcagatccaagttcaggctcagggccaggtgcagctccagccagccatgcagggccaa
acgcagggtggtgaagcaaagcggatcaccctggttctccagcagccctcccaggctggc
tctgcagcacaggcaggtcaagcccaacagcaggtcacacaaatccagcaggttcagaca
gctcaagcgggacaacagcctcaggccccaactagactagtgctgggtcagcttcccgga
ggcaaactcgtgcttcagggaagccagctcgcagccctgacccaggctcgggctgcaggc
caggctggagggcagcctaaagtcctcactattcagctgcaggtgcagcaacagcccaac
caacaaggaggtgtcaagtaccagctagtctcaggagctggcagtactggcagcccacag
gttttgcagatctcgcagggtcaaggaggccagagagttgcagtgccactcaaaatgctt
ctgcagccacagacaagctcagcaacctcgtcaggcggcacggtctctgtggtaaaggtc
atcaacacgtcagccgcaggcccctccactacaaccaccactccgtcccaggccatacgc
atcaccaaggcccccggtgagcctgcctctgtgcgacgagtggagatcctgtgcaagcag
gagaaagcaaaccgtattgtggctgaagctatagcccgggccaaagcacgtggtgagaag
aacctgcccagagtcctgaaccaggatgagcttccaaccacacagacctcgccagaaacg
gggggcactgtgaccgtggtgtctgctgctaagaagaagaccagcggaggaggaagcaag
aagaaaagtcctgtagctggaggaacaacacccaaaaccgcaggtggggccgacaaaaag
agcaaagtgaagacgccaggaggaacaacaggggtggctgggtgcacagtaatacctgga
agtgggaacaagagcaaaagcaagaccaagacaaacactattactctcgtaggagcaaaa
aaaagaaagagaaacgcgtcctcagaccactctgatggggagttgagtcccgcctcacct
gctacactggaggatgacttgactacgaagaggcgctccaatcgtgtggtaaagaggaag
aagtacacagaggacttggatatcaagataacggatgatgaggatgagcaggaagacgta
gacgttactacaaccgcagcagctgtggcctccatcagtggcgggacagcggcgcagctt
aaacaggaaatggagctggatgtcgatggacagccgagcatgcagttctttgtggagaac
ccaagtgaggaagatgctgccattgtagacaaagttctgtctatgaggttaaccaagaaa
gaagtgacccagggccagtacaccaatgttgaggaattctttgtcaaatacaagaactat
tcatacttacactgtgagtgggccagtttggagcagttggagaaggataagaggatccat
caaaagatcaagaggttcaagaccaaacacgcacagatgaggcacatcttccaggaggat
gaggagccttttaacccggactatgtagaggtggacaggatcctggacgtttcccacagc
gtggacaaggacaatggcgagcctgttatctactatttggtgaagtggtgctctctgcct
tatgaagacgccacttgggaactgaaagaggatgtggacgagggcaaggtcggagacttt
ggcaaaatccaaaacagacaacctcgtctgaagagagcggcacggccatctgccagttca
tggaaaaagttggaggagtccagagagtacaagaatggtaacacactcagagagtaccag
ctagaaggagtcaactggctgctcttcaactggtacaacaggcagaactgtatcctggca
gatgagatgggtctggggaagaccatccagtctatcacgctgttgtccgagatctacgct
gctggcctccaaggccctttcctggtcattgctcccctctctaccatcaccaactgggag
agggagttctgcacatggaccaacatgaatgccatcgtctaccacggcagcttggccagc
agacagatgatccagcagtatgagatgtactgcaaggatgataaggagcacttgatccca
ggtgcatacaagtttgacgctctcatcacgaccttcgagatggtgttatctgactgccca
gagctgagggagatctcctggcgttgtgtgatcattgatgaggctcaccgcctcaagaat
cgcaactgcaagctgttggatagcttgaagatgctggatctggaacacaaagtgttgttg
accggcactcctctccagaacactgtggaggaactcttcagtctgcttcatttcctggag
ccagctcagtttccttctgagactgaattcctcagagactttggagacctcaaaacagag
gagcaggttcaaaagctgcaggccatcttgaaacccatgatgctacgaaggctcaaagag
gatgttgagaagaacttggcacccaaacaggagaccatcattgaggttgagttgacggat
gtccagaagaagtactaccgggccatcctggagaggaacttcagcttcctcagtctaggg
gcaaacagtaacagcaatgtccccaacctgctcaacactatgatggagctacgcaagtgc
tgcaaccacccctacctcatcaatggcgcggaggagaagatcgtagcggagttgcgggag
gtgtacgaccccctggctcccgacttccatttgcaggccctcattcggtcggccggcaag
ctggtgctactggacaagctgctgcctcgcctcaaggctggaggacacaaagtgctcatc
ttctcccagatggtgcgctgcttagacattctggaggactacctcatcaacaagagatac
ctttatgaacgaattgatggcagagtgcgtgggaacctgcgtcaggctgccatcgatcgc
ttcagcaagcctgactcagaccgctttgtcttcctgctgtgtacccgtgctggtggcctg
ggtattaacctcactgctgctgacacatgtgttatatttgactctgactggaaccctcaa
aatgacctgcaggctcaagcacggtgtcatcgtattggccagtctaaggctgtcaaggtc
taccgtctgatcactaggaattcttatgagagggagatgctggataaagccagtctgaag
cttggcctggaccgggccgtcctgcagagtatgagtggcaacaaagacagcaatgtcaac
gggatccagcagttctccaagaaggagattgaggacctgctgaggaagggagcttatgct
gccatcatggatgagaacgatgaaggcagtcgcttctgtgaggaggacatcgaccagatc
cttcagcgaagagccacaacaatcacaatcgagagtgagggcaagggctccacgttctcc
aaggccagctttgtggcctctgagaaccgcaatgacatcgccctcgatgacccagagttc
tggcagaagtgggccaagaaagccgacatagacatggacactatcaacagaaagaatacc
ctcgtgatcgatactcccagagtccgcaagcagacccgtcagtactccactttacgaggt
gaaggtggagacctgtctgatctggacagtgacgaggagtatcctccttccaattccaga
cagtcgcgatcttccagacgcgctgaccgtcacagtggagggggttacggccgcacggac
tgtttccgggtcgagaaacacctgcttgtctatggttggggtcgctggagggacatctta
tctcacgccagatgtaagcgtcgcttgagtgaacgcgacgtggagacaatctgccgtgtc
atcctggtcttttgcctgctccactaccgtggagatgagaacatcaagagcttcatctgg
gagctcatcacaccgccagagaatgggcgcgaaccccaaacactactcaaccactctggc
ttgtctatccctgttccaagaggcaggaaggggaagagggtaaaggcccagagcacattc
gatgttcagaaggtggagtggatccgtaaatacaaccctgacaccctgcttctggacgac
agctaccgaaaacacctcaagcaccagtgcaacaaggtgttgctgagggtgcgtatgctc
tactacctgaagcaggaggtgatcggcgagcattccgactctgtcctgaaaggggctaac
atccgggatgttgatatctggatgcctgagatggagcagcaggaggtacctgcagggtgg
tgggatactgaggcagaccgctcgctgcttgctggagtattcaaacatggttatgagatg
tacaccaccatgcgggctgatccctgcctctccttcctggagagagctggacggcctgat
gataaggccattgatgccgagcagcacactggtgacgcagagatgggagaggaggctgac
tatgataagtactcagaggacccagagttcaagcctgcgtcaagacacgccaaagatctc
tttgaggagcctgactccatgaccgtggacgatgagatttctgtagatgacaaagcgggg
ccagtaatcacagaaatcatatccaccaccaccaccacgcagagtggtccgtgcgactgg
ccctccagctcatcacttacagcacggttacggcggctgattacagcttaccaacgcagt
tacaggcaggagcagctaaagatcgaagcggaggcaaagggcgaccgcaggcgcagacgg
tgcgaacaggccagcaagctgaaggagattgcacggcaggagcgccagcagaggtggaca
cgcagggaagaatgtgacttctaccgcgtggtatccacttttggtgtggaaaagataaag
aaggagccaggtcttcccgaaggcagagaccctgaatttgactggaaccgcttccgtacc
tttgctcgtctggataaaaaaacagatgagagcctcagtcgatacttccgttcttttgtc
gccatgtgtcggagagtttgccacctgcgcccgggccatggtgaagatccatcacagctc
tcccagactgtggcccccatcactgaggaacgtgcttcccgtaccctttatcgtattagc
ctcctgcgtcgactccgtgagcgagtcctgccccacccttccctggaggagcgtctgaca
ctggctccaaccagctccgagctccccacttggtggaacataccggaccacgatcgtcag
ctgatgctgggcgcttcactgcacggcgtcagccgcacagagctctccatcttctcagac
ccgcagtttaccttcagtcaggctcgagaagagttcattcagaaccaacaggccccgccc
cctccaccgccacctcaggcaccgctcatcatgcccctcagcctgctaaaggccgagcgg
gacatgtctggtatgagggaggagagagcagaagaggacggccggttgctcggaggtcaa
attggtgacctgcaaggtacgcctttgagtcaccatgatggcaaggcacgagggcagggc
tggggcatgaagaggagcagggagagggttggaaaaactggaggaggaaggaagggtgag
ggagggtctgattctgactctgattctgattcgggctcgtcgtcatctgagagatcaggc
agcagtgatgaaagcggagagagtgaggaagaaggagcaggcatgaagctgtgtgacgtg
gatgaagataatagtttactctctatgactacatctcacgatggccttcctcctcctgat
ccactcagactggattggcctaaggaccgtgtgttgatcaaccgtctagacagtctgtgc
actctggtgctgaccggtcagtggccgtcaggtcggcggtatgtgtctgaggctcagctc
aacccgagctcagagcttgccggagacgagatggcctacacaagggtgatacgtaaatct
ggcattatgcctggtggccctggggcagagggtgatgacggagagttcactgtcaagctc
ctcaaggaggaggggctgaagctgaccttctctaagcaggctctgatgcccaatgggtct
gcgggagagagcagccgcaaaaaacgcaaggaccaagagttgtcagacccagatggactt
gatccattggagcgtactcctcgccgcagggaccctcccacctggctgaaggagaatccc
gaatatgaggtagagggagacatgctggaacttctcgtgaacaggagcaagaggaagagg
aggaggagggcagataaagctctgacaggcagtgagaaggtcaaagtcattaacatgagg
acaggaaagaaggtcggagctgctttctgtccgatgctgcaagacctgagggaatatctg
gaggagaatcctgacaatgctgtagcacctgactggtctgaaactgtccggaactctggt
ttcctgcccgagaccttcttccatcgactgctgactgagcattcagagatcccgaagaaa
agccgccgccggcatcaccaccaccaccaccaccaccatcatcatcatcacactccagat
cccacaccggaggaccctaacatagacggagttgaagaggagactctggtctcagacgga
gcctacatgatggacgaggaggacctggagacctcccatcatttcctcaccagtgcggac
tttgacgttaaaatggagtgcggcgacagcctttctcaaggtgactatgacagctcggat
caagaggcgctattggaagatgtcatcatagcacagaaggactctgactcctcatcaagc
tcagaggattga
DBGET
integrated database retrieval system
