Larimichthys crocea (large yellow croaker): 104928054
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Entry
104928054 CDS
T04659
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104928054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104928054
03036 Chromosome and associated proteins [BR:
lco03036
]
104928054
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104928054
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104928054
mRNA degradation factors
5'-3' decay
Decapping complex
104928054
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104928054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
104928054
NCBI-ProteinID:
XP_019109709
UniProt:
A0A6G0HTY6
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Position
XIII:8137537..8147351
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AA seq
490 aa
AA seq
DB search
MATARTETVGPVVMGLNKQNGQLRGGPTKPASVQPAPTTQGKSLGAPQIAGGAAQDGGGI
KFGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEES
IPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQ
ISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMD
EADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTL
KGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHA
KMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG
RFGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHSSGADCDVEEVE
EKPGHQHDST
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaccgtcggcccggtcgtcatgggactgaacaagcagaac
gggcagctcagaggaggaccgaccaaaccagcttcagtccagccagcacccacaactcaa
ggaaagtctttgggtgcaccccagatagcaggcggcgccgctcaggacggaggaggcatc
aagttcggagatgactggaaaaagagcctaaagctccctcccaaagacaacagggtcaaa
acctcagatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaaagagaa
ctcctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagc
attcccatcgccctgtctggacgggatattctggctcgggctaagaacggaacaggaaaa
agtggagcttatctcatcccgctgctggagaggatagacctgaaaaaggaccacatacag
gcacttgtcatggtgcccactcgtgagctggcactacaggtgagccagatctccatccag
atcagcaaacacctcggaggagtcaaagtcatggccaccacggggggcaccaacctgcga
gatgacatcatgcgcctggatgagaccgtgcacgtggtcatcgctacacctggtaggatc
ctggacttgataaagaagggcgtggcaaaggtggacagagtccagatgatggtgatggat
gaggcggataagctgctgtctcaggactttgtggtgctcatcgaggatatcatcagcttc
ctggccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaag
ttcatggccaagcaccttcagaaaccctacgagataaacctgatggaggaactgactctg
aagggcattactcagtactacgcctacgtcacagagaggcaaaaagtccactgcctcaac
acactgttctccaggcttcagatcaaccagtcaattatcttctgtaactccacccagagg
gtggagctcttggccaagaagatcactcagctgggctactcctgcttctacatccatgcc
aagatgatgcaggaatacagaaatcgtgttttccacgacttcagaaacggactgtgcaga
aacctcgtctgcactgatctcttcaccagaggtatcgacatccaggctgtcaatgtcgtc
atcaatttcgacttccccaagaatgctgagacttacctccatcgtatcggaagatcaggg
aggttcggtcacctgggcctggccatcaacctgatcacgtcagaggaccggttcaacctg
aaggccatcgaagaccagctggtgaccgacatcaagcccattccaggcagcatcgacaag
agcctctacgtggccgagttccactcgtccggcgccgactgtgacgtggaggaggtcgag
gagaaaccaggacaccaacatgacagcacctaa
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