Larimichthys crocea (large yellow croaker): 104928451
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Entry
104928451 CDS
T04659
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104928451 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104928451 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104928451 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104928451 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104928451 (col4a1)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104928451 (col4a1)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104928451 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Cry1Ac_D5
Motif
Other DBs
NCBI-GeneID:
104928451
NCBI-ProteinID:
XP_010741043
LinkDB
All DBs
Position
XVIII:complement(17441267..17478883)
Genome browser
AA seq
1640 aa
AA seq
DB search
MLLPSGTLLLLAALYSSVDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGSKGDVGVPGAPGLKGVRGPPGRAGFPGNPGLPGINGNDGPQGLPGIPGCN
GTKGDRGRDGAFGIPGLQGPPGIPGIPGMKGDPGGVIGIVPLKGDRGFPGTPGLHGPSGP
PGPIGPPGPRGYQGPKGDPGIPGPPGEKGDRLAFVSEKGEKGDQGVRGPPGPPGGPQGVE
GKTTIYLPGPQGETGFRGDKGEKGFCIPHLPGIKGEAGPPGQRGKPGKDGDDGLKGEKGF
TGAPGYPGSQGEKGEKGPPGHGTGAPGDPGPPGFPGLQGEKGFPGPPGEAGPAGQNIEGP
RGERGQKGDLGQKGDRGLEGESLVGPPGQPGLPGPPGLPGTPAKPTDCQSIQKGSPGPPG
PQGLRGEEGQKGDRGDTCVQCESSGPPGLPGPIGPKGDRGPPGPVGSKGDKGQTGTPGQP
GRTGSQGDPGLMGAPGAVGEPGDIFVAPGLKGDKGLPGPTGTPGLPGLDGQPGREGLPGI
PGLKGEPAKEGIKGERGPDGDPGFTGPQGERGPPGVPGFGRPGEPGEKGSAGRAGIPGAP
GVPGTKGEPGTGVSSPGAKGEPGVQGETGRPGLPGDRGLAGDPGLPGFPGQKGDPGQPGI
GLPGPTGPKGNSGIPGAPGLPGDRGKPGPDGLTGQSGSPGQKGEPGRGLPGQKGLQGNPG
ITGFPGEKGGIGLPGIPGREGHTGPQGPQGVKGEVGAPGPPGLVGLPGAPGKGSPGAPGP
QGPPGEPGPFGIEGIKGEKGYPGPSGLDMPGPQGETGAPGFPGMPGYKGLPGPPGLAGRD
GQIGNQGPKGEMGVIGTPGVPGFPGPPGTPGNPGARGDPGFTGSRGDSGEPGPKGERGDR
GLQGPPGNMSKVEMEHMKGDKGDIGDRGNPGLTGQKGFRGLPGDPGMPGKDGEPGSPGQP
GEKGDSGFPGEPGRMGQTGQKGSVGEMGIPGPVGPKGTKGDIGTAGHPGFRGEDGQKGDK
GLAGEPGIGIPGLPGEKGQTGQPGFPGIPGEKGFRGHEGMPGKPGLQGSKGDKGSIGYTG
QPGRPGEKGTPGLPGSSGEPGREGRPGEGGLQGPPGPPGEKGEPGVDGIPGSSGDKGVPG
IPGRGFPGPPGALGVKGDKGSTGFPGTPGHPGIPGFKGDKGFPGLQGPQGEPGERGHPGI
SLDGPKGDKGETGLPGEAGVTGEPGPAGVPGRTGLQGEKGDQGNPGFQGETGHKGDPGSS
GLPGHPGLPGIDGHKGERGLQGVPGFPGTKGIVGDIGVKGELGDRGFPGEKGNDGPPGQP
GPHTFIKGDIGFPGIQGLPGPQGPSGFPGQKGQLGMTGIQGPKGEDGQPGWNGQPGGKGE
PGLPGPQGPRGYPGPPGPDGVPGQVGQPGPSSMDHGFLVTRHSQSVEVPLCPEGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAIHSQTIMIPPCPHGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPAT
LKAGSLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgttactgctggcggctctctactcaagtgtagacctg
acgggggctgagggttgtgggacctcgtgtggaaaatgcgactgcagtggtgtgaaagga
gcaaagggtgagcgcggatttccaggtcttcaaggtaatatgggattcccaggaatgcag
ggacctgaagggcctccagggccaatgggctccaagggagatgtgggcgtacctggagct
cctggactgaaaggcgtgcggggtcctcctggtcgggcaggcttcccaggaaacccagga
ctaccaggcatcaatggaaacgatggcccacaaggtcttccaggtatcccaggatgcaat
ggcactaaaggagacagaggaagggatggtgcttttggtattcccggtcttcaaggacct
cctggcatcccgggaattcctggaatgaagggtgaccctggtggtgtgatcggaattgtt
cctctgaaaggagacagaggattccccggcacgcctggattacatggaccaagtggacct
cctggacctatcggacctccaggaccacgtggctatcaaggacccaaaggagatcctggc
atccccggcccccccggagagaagggcgacaggctggcctttgtgagtgagaaaggagag
aagggtgatcagggagttcgtggcccacctggccctcctggaggacctcagggagtggaa
ggcaaaaccacaatatacctacctggaccacagggtgaaacaggatttcgtggtgacaaa
ggagaaaaaggcttttgcatcccgcatcttcctggtatcaaaggtgaagctggaccacct
gggcaacgaggtaaacctggcaaggatggagacgatggactaaagggagaaaaaggtttt
actggagctcctggataccctggctcccagggtgaaaagggagaaaaaggaccaccaggt
catggtactggggcccctggtgatccaggtcctcctggtttcccaggtttacaaggagaa
aaaggttttcctggtcctccgggagaggcaggtccagcgggtcaaaacattgaaggacct
cgtggtgagagaggtcagaagggagacttgggtcagaagggagacaggggtttggaagga
gagtctcttgttggacctccaggacaaccagggttacctggaccccctggactacctgga
acaccagctaaacctactgactgtcagagcattcagaaaggatctcctggcccacctgga
cctcaagggttacggggggaagagggacagaaaggtgacagaggagatacatgtgttcag
tgtgaaagttctggcccacctggactacctggccccatcggccctaaaggagaccgagga
cctcctgggcctgtaggcagcaagggagacaaaggtcaaactggcactcctggacaacct
ggaagaactggatctcaaggcgatcctggtttgatgggagcccccggtgctgttggtgag
ccaggggacattttcgtagctcctggtctgaagggcgacaaaggtctgcctggccccaca
ggaacaccggggctaccagggctggatggacagccagggagagaaggcctcccaggtata
cctggcctcaaaggagaacccgccaaagagggaataaagggtgagcgtggaccagatgga
gaccctggttttactgggcctcagggagagagggggccacctggcgtgccaggctttggt
cgacctggagagcctggagagaagggcagtgcaggaagagcaggaattcctggagctcct
ggtgtacctggtacaaaaggtgagccgggtacaggtgtgagcagtcctggagctaaggga
gaacctggagtacaaggagaaactggaagacctggacttccaggtgacagaggtctggcg
ggagacccagggttaccaggtttccctggacaaaagggtgatcccggacagcctggaatt
ggattacccggcccaactggtcctaaaggtaacagtggaattcctggagcccctggatta
ccaggagaccgaggaaaaccagggccggacggcttgaccggacaatctggttcacctgga
caaaaaggtgaaccaggacggggtcttccagggcaaaaaggtttgcagggcaatccagga
attacaggctttccaggagagaagggtggcattggactgcctggtattcctggacgagaa
ggccatacaggaccacaagggcctcagggagtcaaaggtgaggtgggagccccaggacca
cctggactggttggcttgccaggtgcaccaggaaaaggctcgcccggagctcccggacca
caaggaccacctggagagcctggaccattcggtattgaaggtataaaaggagaaaagggc
tatccaggtccttctggtctggacatgcctggtcctcagggagagacgggagcccccggg
ttcccaggaatgccgggttacaaaggactgccagggccaccaggcttagcaggcagggat
ggacagattggaaaccaaggtcctaaaggagaaatgggggttataggtacaccaggagta
ccgggctttcctggaccacctggtacacctggaaatcctggtgcaagaggtgatcctggt
tttactggatcaagaggtgatagtggagagcctggacctaaaggagaaaggggagatcga
ggtcttcaaggacctcctgggaacatgagcaaagttgagatggagcatatgaaaggggat
aagggagacattggagacagaggtaaccctgggctcactggacagaagggcttccgtgga
cttcctggagaccctggaatgccaggcaaagacggagagcctggatcacctggacaacca
ggtgaaaaaggagactccggtttccctggagaacctggcaggatgggacaaactggacag
aaaggcagtgtaggagagatgggaataccaggtccggtcggtccaaagggtactaaagga
gatattggtacagcgggacatcctggattcagaggcgaagatgggcagaaaggagacaag
ggtctggctggtgagccaggtattgggatcccaggacttccaggagaaaagggtcaaaca
ggtcagccaggattcccaggaattccaggagagaaaggtttcaggggtcatgagggtatg
cctggaaagccaggattgcaaggatccaaaggagacaaaggaagcatcgggtatacaggt
cagccaggtagaccaggtgagaagggcacccctgggctgccagggtcttcaggagaacct
ggtcgtgagggtcgtcccggtgaaggtggcttgcagggacctcctggtcctcctggagag
aagggagagcctggagttgacggcatccctggatcctcaggagacaaaggagttccaggt
atacctggacgaggtttccctgggccacctggggctcttggtgtcaaaggtgacaaaggt
agtactggtttccctggaactccaggtcatccaggcatccctggtttcaaaggtgataag
ggatttccaggcttgcagggaccccagggtgagccaggagaaagggggcacccgggtatc
tctctcgacggccctaagggagacaagggagaaacaggactgcccggagaagcaggagtc
acaggagaaccaggacccgctggtgtgccaggcagaaccggcctacagggagaaaaagga
gaccagggtaaccctggtttccagggggagactggacataagggtgatcctggaagttct
ggattacctggacaccctggtcttccaggcattgatggacataagggagagaggggattg
cagggtgtcccaggattcccaggtacaaagggtattgttggggacattggagtcaaagga
gaacttggagacagaggattcccaggagaaaagggcaatgacggtccccctggtcaacct
ggcccacacacctttatcaagggagacatcgggttcccagggattcaaggtttaccagga
ccccagggaccatctgggttccctggacagaaaggacagctaggtatgaccggtattcaa
gggccaaaaggcgaagatggccagcctggatggaacggtcagcccggaggcaaaggagag
cctggtctcccggggccgcaaggacccagaggataccctggccccccaggacctgacggt
gtaccaggtcaagtgggtcaacccggcccctcctccatggatcacgggttcctggtaacc
cgtcacagccaatcggtggaggttccactgtgccctgaaggaaccacgcccatatacgac
ggctactctttgctgtacgttcaaggcaacgaacgctctcatggacaggacttaggtacg
gcaggcagctgtctaaggaagttcagccccatgcccttcctgttctgtaacatcaacaat
gtgtgcaattttgcctcccgtaatgactactcctactggctcacctcccctgagcccatg
cccatgagcatggcacccatcactggtcaaagcatcaaacccttcatcagcaggtgtgcc
gtgtgtgaagccccggccatggtgatagccattcacagtcagaccatcatgatcccacca
tgtcctcacggctgggactctctatggattggctactcctttgtcatgcacaccagcgct
ggtgctgagggttcgggccaggctctggcctctcctggttcctgcctggaggagttccgc
agcgctccattcatcgagtgtcacggccgcgggacctgcaactactacgccaactcctac
agcttctggcttgccaccattgaagacaatgagatgtttacgaaacctgtcccagcaaca
ctaaaggcaggcagcctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
tag
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integrated database retrieval system
