Larimichthys crocea (large yellow croaker): 104928875
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Entry
104928875 CDS
T04659
Symbol
dis3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104928875 (dis3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104928875 (dis3)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104928875 (dis3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Dis3l2_C_term
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
104928875
NCBI-ProteinID:
XP_010741542
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All DBs
Position
III:19645742..19653013
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AA seq
950 aa
AA seq
DB search
MLKSKTFVKKTRSGGVMKIVREHYLRDDIWCGSESCSECKQESTVLQRDACIESNLCPYP
HYLIPDTNVVLHQIDVLEDPVIRNVIIVQTVLQEVRHRSAPVYKRLKDIIHEKEKHFYTF
TNEHHNETFVEREPGESANDRNDRAIRVAAKWYSQHLKTSKSDPDGLKVVLLTNDQGNKE
KAEESGLLVYKCEEYIKSLIANPELVDQLALSNDDKNEITSSKMLFPEHLPLSRIQAGIK
SGSFLQGTFRASRDNYLEATVFVQGEGEDSTEVLLQGLQNLNRSVHQDVVAVQLLPRDQW
VAPSSVVLQDEGAAKDDDAEEEEDRALRISAAEAARKPTGKVVGIIKRSWRPFCGMLNVS
HIKESTRHLFTPADRRVPRIRIETRQASTLAGQRIMVAIDGWPRHSRYPNGHFVRSLGSA
GDKETEQEVLLLEHDVPHQAFSQAVLSFLPKMPWSITPEDMVKREDLRHLTVCSVDPPGC
TDIDDALHCRELDNGNLEVGVHIADVSHFIRPGNALDKEAANRGTTVYLCGKRIDMVPEL
LSSNLCSLRSDVERMAFSCIWEMNHKAEILKTRFTKSVINSKASLTYAEAQMRIDDTTRT
DDITKSLRGLNKLAKILKKQRIKNGALTLSSLEVRFHIDSETHDPIDLQTKELMETNSMV
EEFMLLANISVAQKIYDEFPDCAMLRKHPAPPPSNYDILLKAAKSKSVEIHTDSAKALAD
SLDMAKVDNFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYA
DIIVHRLLAVAIGADSTYPDLMDKPKQSALANNLNYRHKMSQYAQRASVAFHTQLFFKSR
GILNEEGFVLFVRKNAIIVLIPKFGLEGTVFFDTKDKATPNLVFDEEGPALKVEQHTFCI
FDKVKVTISLDDSNIQHQKIRMSLIHPVIPGVSVPAPDVEPQAKKPKLDR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatctaaaaccttcgttaagaagacccgctcgggtggagtgatgaagattgtg
cgtgagcattatctgagagatgatatctggtgcgggagcgaaagttgctctgagtgcaaa
caggagtccacggtgctgcagagagacgcgtgcatcgagagcaacctgtgcccttatcca
cattatctgatccctgacaccaatgtggtgctgcaccagattgacgtgttggaggatcct
gtgatccgtaacgtgattatcgttcagactgtgctgcaggaggtacgccaccgcagtgca
ccagtctacaaacgcctgaaggacatcatacacgagaaagagaaacacttctacaccttt
accaacgaacaccacaatgagacgtttgttgaacgtgaaccaggggagagcgccaatgac
cgtaacgaccgtgcaatccgtgtggcagcaaaatggtacagccagcacctaaagacgtcc
aagtctgacccagacgggctcaaagtggtcctgctcaccaatgaccaagggaacaaagag
aaggcagaggagagcggcctgctggtgtacaaatgcgaagagtatatcaagagtcttata
gcgaaccctgagcttgtggatcaactagctttgtccaatgatgacaagaatgagatcact
agcagtaagatgttattcccagagcacctccctctgtccaggatccaagcaggaattaag
agtgggtccttcctccagggcacctttagggccagcagagacaactatctggaggccaca
gtttttgtccagggagagggggaagacagcacagaggttctcctccagggacttcagaac
ctcaacagatcagtgcaccaggatgtggttgccgtgcagctgttgccacgggatcagtgg
gtggcgccctcctcagtcgtgctgcaggatgaaggagcagcaaaggacgacgatgctgaa
gaagaggaggatagagcgttgaggatatcggcagctgaagcagccaggaagcccacaggg
aaagtagtgggaatcatcaaaaggagctggaggccattctgcggcatgctcaatgtctcc
catattaaagagtcaacccggcatctctttaccccagcagaccgccgtgtccctcgcatt
cgcattgaaacacgtcaggcatctacactggcaggccagaggatcatggtggccatcgat
ggctggcccagacactccagatatccaaatggtcactttgtgcgcagtctgggaagtgca
ggggacaaagagacagagcaggaggtgctgctactggagcatgacgtcccccaccaggcc
ttctctcaggctgtgctcagtttccttcccaagatgccatggtccatcacaccagaggac
atggtgaagagagaggacttgaggcatctgacagtgtgcagtgtggatcctccaggatgt
acagacatagatgacgccctgcactgtagagagcttgacaatggaaaccttgaggtgggc
gtccacatcgctgatgtcagtcacttcatcagacctggcaacgctttggacaaagaagct
gcgaaccgcggcaccaccgtctacctgtgtggcaaaaggatagacatggttcctgagctg
ctcagctccaatctgtgttctttacgctccgatgtggagaggatggctttctcgtgtatc
tgggagatgaaccacaaggctgaaattctaaagacccggttcacaaaaagcgtcattaac
tcaaaggcatcactgacgtatgccgaggcacaaatgaggattgatgacaccaccaggact
gatgacatcaccaagagcctacgaggtctcaacaaactggccaaaatcctcaaaaagcag
aggataaagaatggggcgttgacactgtcgtccttagaggtccgtttccacattgacagt
gaaacccacgaccccattgacctccagaccaaagagcttatggagacaaactccatggtg
gaggagttcatgttgctggccaatatttccgtcgctcagaagatttacgatgaatttcca
gactgcgccatgctgaggaagcatccagcaccacctccatctaactacgacatcctgctc
aaggcagcaaagtccaagtctgttgagatccacacagattcggccaaggctctggctgac
tccctcgacatggccaaagtggacaacttcccgtactttaacacgctactgcgcatcttg
gcaactcgctgcatgatgcaggctgtctatttttgttctggcatggacagcgatttccac
cactatggccttgcttcacccatttatacacacttcacctcacctattaggaggtatgca
gatattatagtacaccgtctgttggcagtggccataggagcagacagcacctacccagat
ttgatggacaaaccaaagcagtcagccctcgccaacaacctcaactacagacataaaatg
tctcagtatgcacagagggcatctgtggccttccacacacagttgttcttcaagagccga
ggcatcctgaacgaagagggatttgttctgtttgtgaggaagaacgcaatcattgtactc
atcccaaagtttggcctggagggtacggtcttctttgacaccaaagacaaggcgacacca
aaccttgtttttgatgaagagggtcccgctctgaaggtagagcagcacaccttctgcata
tttgacaaggtgaaggtcaccatcagcctagatgactccaatattcagcaccagaagatc
cgcatgtctctgattcaccctgtgatccctggtgtgagtgttccagccccagatgttgaa
ccacaggccaagaaaccaaaactggaccgctga
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