Larimichthys crocea (large yellow croaker): 104928885
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Entry
104928885 CDS
T04659
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104928885 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104928885 (xrcc5)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
104928885 (xrcc5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
DUF6005
VWA
Motif
Other DBs
NCBI-GeneID:
104928885
NCBI-ProteinID:
XP_010741561
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Position
XVIII:11249071..11257960
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AA seq
727 aa
AA seq
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MAGSRSALVLCMDVGFSMSNSAPDEDPPFDLAKQVIQKFVQRQVFAETKDELALVLFGTD
STKNPLNQNGQYQNITVHRNLMVPDFELLEEIENQVHPESQQSDWMDALVVCMDLIQTQT
KGKKYDRLNIALLTDLSTQTNTDQLDVILENLKQAGITLQFFLPFPAEEDEEGGGDADRR
GPGHPGTGKGLSSEQKDGLDVVKHVMLTLDEEDGLDQIYTFRNAIEQLCMFKRVERRPVA
WPCQLTIGSCLSIRIVGYKAVTEEKLKKTWITVDAQTSQREDVKRETVYCLDDDNETEVQ
KDDTIQGFRYGSDIVPFSKVDQDQMKYTHDGKCFAVLGFTKQSLVRRNLFMGNQVVKIFA
AKDDEHAAVALSALIRALDELQMVAIVRYAYDRRSNPQVGAAFPYIKKDYECLIYIQLPF
MEDLRSFTFPSLENNKRFTPSDTQLSAVDSLIDSMMLVEEDEDENAEQKDMFEVHHIPNP
AFQRHFQCLHHRAVNPGTPLPPMESWLKAALERPDVINERCQAPLEEMKRKFPLTEVEKK
KKPKTSAQIFGKDSEEPDAKKAKGDEEDEGYSLADIAEGSVTSVGSVDPARDFGILIKMK
SLPFGEVCQQLTHRIEQLLSNKSTQYYMKSITCIQAFREQSVKLGNADLYNSYLQSLKRS
IPNRRLEVFWDLLVQDAITLISKDEVEGSTVSKNDAYQFLAAEEKKEEASAPPAEDTGDV
DDLLDMM
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcagggtccagatcagcgttggttttgtgcatggatgttggattctccatgtccaac
tctgccccggatgaagatcctccctttgacctcgctaaacaagtcatccagaagtttgtc
cagcggcaggtttttgcagagaccaaggatgaactggctttagttctgtttggcacagac
tccaccaaaaacccactgaaccagaatgggcagtaccagaacatcacagtgcatcgtaac
ctcatggtacctgactttgagcttctggaggaaatagagaatcaggtccatccagagagc
cagcagtctgattggatggatgctcttgtcgtctgcatggatctcattcagacacaaaca
aaggggaagaagtatgatcgtctcaacattgccctcctgactgacctcagcactcagacc
aacacagatcaactggatgttattctcgaaaacttgaaacaagccggaatcaccctgcag
ttttttttgcctttccctgcagaggaagatgaagagggtggaggagatgcggacagaaga
ggccctggtcacccgggcactggaaagggcctgtccagtgaacagaaggatggcctggac
gtggtgaaacacgtcatgctgaccctggatgaagaggacggcctggatcaaatttacacc
ttcaggaatgcgattgagcagctgtgcatgttcaagcgcgtcgagcgcagacccgtggct
tggccctgtcagctgaccatcggcagctgtctgtccatccgtatcgttggctacaaagcg
gtgacagaagagaaactgaaaaaaacgtggattacagttgacgctcagaccagccagaga
gaagacgtgaagagagagactgtctactgtctggatgatgacaacgagacagaggtgcag
aaggacgataccatccaaggtttccgttacggaagtgatatcgttcccttctccaaagtt
gatcaagaccagatgaaatacacgcacgatgggaagtgctttgctgttctcggcttcacc
aaacagagcctggtacgtcgcaatctgttcatggggaatcaagtcgtcaagatttttgct
gccaaggatgatgagcacgcagcagttgcactgtccgctttgatccgagcgctagatgaa
ctccagatggttgccattgtacgttacgcctatgatcgacgcagcaaccctcaagtagga
gctgctttcccgtacatcaaaaaggactacgagtgtctgatatatatccagctgcctttc
atggaggatctcagaagttttacatttccctctcttgaaaacaacaaaaggttcacgccg
tcagacacccagctgtctgctgtggactctctcattgactccatgatgttggtagaggag
gatgaggatgaaaatgcagaacaaaaggacatgtttgaggtccaccacattcccaaccct
gccttccagaggcacttccagtgtctgcatcatcgggccgtaaaccccggcacccctcta
ccccccatggagtcgtggctgaaggccgctcttgagcgccctgatgtcattaatgaacgg
tgccaggctccactggaggagatgaagagaaagtttcctctcacggaagtggagaagaaa
aagaagccgaagacaagcgctcagatttttggcaaagactctgaggagccagatgccaag
aaggcaaaaggagacgaagaagacgagggttatagcctggctgacattgctgaaggttct
gttacttcggtgggaagcgtggatccagcccgagacttcggtattctgatcaagatgaag
agtcttccattcggagaagtctgtcagcaactgactcacaggatagagcagttgcttagc
aacaagagcacacagtactacatgaaaagcatcacctgcatccaggcttttagagagcag
tctgttaagctggggaatgctgatctgtacaacagctacctccagtccctaaaaagaagc
atcccaaacagacggctggaggttttctgggacctgcttgttcaagatgccataactctg
atcagtaaggacgaggttgaaggaagcactgtatccaaaaacgatgcatatcagtttcta
gctgccgaagagaagaaggaggaggcatccgcaccaccggctgaagatactggcgatgtt
gacgacctgctggacatgatgtaa
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