Larimichthys crocea (large yellow croaker): 104929102
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Entry
104929102 CDS
T04659
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104929102
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
104929102
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
UBA_N4BP1
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
104929102
NCBI-ProteinID:
XP_019126694
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Position
XIX:8142483..8156070
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AA seq
962 aa
AA seq
DB search
MGQKDHVEAGAGHILDLGLDLEYLHVAGADRQAGGADGPPAMEEQEESSGSNSSTANSPT
PAAVEENAGSDAECEPAPPSSATLAAGPDPDGGEGGLTHIKNAHQPLCRTQCVDLGTEGP
PEPPSELSSELEHDTPVKSSPGSPCKHPPEPSTSSEPASEASGKEYQAKLEFALKLGYSE
ETVRLVLSKLGPDTLINDILGELVKLGTKSDSEQPAASLASTSSSSSSSSSCGCSELLDG
QRSDSPCPSDPPCDQDNLRPIVVDGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHHDITV
FVPAWRKEQSRPDAPITDQEILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESD
GIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPV
MPEQKKQPCPYGKKCTYGHKCKYYHPERGAQPQRAVADELRASAKTCVTTKNQGDAGLVK
SHSVPAGSIEAKKGAPKRQSDPSIRALSYSDAEEKLLAKGRAESQKSSICGSSSSGGLTM
SPAPGGGPPSGLNLAQEQQSRAATPHGLSAPSHDLYPHCESPDLSYYSVTRAYSGLSLSS
RRSPDCRFPNDTDLRLGSMGSTGSECGSESSVSCGSSCDSYSERPCPGCPPDALLEDSVH
FANPHSRLYPHHTASNHELCGLHPADYTNIQHSHSSNTGVHSYHLSVARGQSCAHDQPSP
EAPPKRPLYPLPPHLQHQPLVARSSCPGDYHSLPQSNPHPPGSPLGRCLGPTRAESVSDS
HLYEHLSTSHHHHRTKALPSWDNYYRQPPLPPSRYEPSAYQSLPDTRQSSWHAPPWAQDG
YAQHHSSHPALHPSPTHYLNHPPPPAHSPHPPHPSGTPLPPYPPHSTHLSVPSHAAPSTY
MPPHPDSPAHSRYGDAREKVYVNLCNIFPSELVSRVMARSPHITDPQQLAAAILAEKAQT
GY
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatgtggaggcaggagcaggccacatcctcgacctggggctggat
ttggagtatctccacgtagcaggggctgaccggcaggctggcggcgctgacgggccccct
gctatggaggagcaggaggagagctccggcagcaacagcagcaccgccaattcccctaca
cccgcagcggtggaggaaaatgctgggtctgatgcagagtgcgagccggcgccgccttcc
agcgccaccctcgctgccggccccgacccggatggaggagagggagggttaactcacatt
aagaacgcccaccagccgctttgtcggacccagtgtgtggacttaggcactgagggtcct
cctgaacccccttctgaactctcatcagagcttgaacacgacaccccggtcaagtcgtca
cccggctccccatgcaagcacccaccggaaccctccacatcatcagaaccagcgtccgag
gccagtggaaaggagtaccaggcgaagctggagtttgccctgaagctgggctactctgag
gagacggtgcgactggtgctgtccaagcttggcccggacaccctcatcaacgacatactg
ggagagctggtcaaactgggcaccaagtcagacagcgagcagccggctgcatctttagcg
tctacctcatcgtcttcgtcctcctcttcctcttgcggctgttccgagctgctggacggg
cagagatcggactcgccatgtccgtcagaccctccgtgcgatcaggacaacctgcgaccg
atcgtggtggacggcagcaacgtcgccatgagccatggcaacaaggaagtgttttcctgc
cagggcatccagctggctgtggattggttccttgagcgtggccatcatgacatcacggtg
tttgtgcctgcgtggaggaaagagcagtcccgccctgatgctccgataacagatcaggag
attttgcgtcgccttgagaaggaaaagatcctcgtcttcactccctcgcggcgtgtccaa
ggtcgccgcgtggtttgctatgacgaccgcttcattgtgaagctggcctatgagtcagac
ggcatcatcgtctccaacgataactacagagacctcgctaatgagaaaccagagtggaag
aagttcattgatgagcggctgctcatgtattcctttgtcaacgacaaattcatgcccccg
gatgaccctcttggtcgtcacggccccagcttagacaacttcctgaggaaaagacccgtc
atgcccgagcagaagaagcagccttgtccatatggaaagaagtgcacttacggccacaag
tgtaagtactaccacccggaacgaggcgctcagcctcagcgtgccgtcgccgatgagctg
cgtgccagtgccaagacctgtgttaccacaaaaaaccagggggacgccgggctggtgaag
agccacagtgtgccagctggcagcattgaggcgaaaaaaggtgctccgaaaaggcagtcg
gacccaagcatccgagctctgtcgtacagcgatgccgaggagaagctgctggcaaaaggg
agagcagagagccagaagagcagtatatgtggcagtagcagcagcggtggtctaaccatg
tctccagccccaggaggaggccctccatctggtcttaacctcgcccaggagcagcagtcc
agagcagcgactcctcatggcctatcagcccccagccatgacctttaccctcactgtgag
tctccagacttgagctactactcggtaacgcgtgcctactctggcctgagcctgtcgtcc
agacgaagcccagactgtcgcttccccaatgacacggacctgcggctgggctcgatgggc
tcaacggggtctgaatgcggcagcgaaagcagcgtgagttgcggtagcagctgcgactcg
tacagtgagcggccgtgtcccggatgccctccagatgctttactggaagacagcgtccat
tttgcaaatccccacagccggctgtacccccaccacaccgcgtcaaaccatgaactttgt
ggtcttcatccggccgattacacaaatatccaacacagccactcgtctaacaccggagta
cacagctaccatctgagtgtggcgcgtggccagagttgtgcccacgatcagccttcacca
gaggcccctccaaagcgccctctctaccccttaccgcctcacctccagcaccagccgctg
gtcgctcgctccagctgcccaggcgactatcactccctgccccagtccaaccctcaccct
cctggctctcctcttgggcgctgcctgggccccacacgagcagagagtgtgtcggactcc
catctgtacgaacacctgtcaacgtcacaccatcaccaccggacaaaagctctgcccagc
tgggacaactactacaggcagcctccattgccgccgtccaggtacgagccgtctgcctat
cagagcctgccagacacacgccagtcgtcctggcacgcccctccgtgggcacaagacggc
tacgcccagcaccactcctcccacccagctctccacccgtccccgacacactacctaaac
cacccaccgcctccagcccactcccctcacccgcctcatccgtcaggaactcccctccca
ccgtatccacctcacagcactcacctttcggtgccctcccacgctgctccctccacctac
atgccaccgcacccggattcccccgcacacagccgctacggggacgcgagggagaaagtg
tacgtcaacctgtgcaacatctttccctctgagctggtgagccgggtgatggccaggagc
cctcacatcaccgacccgcagcagctggcagccgccatcctcgcggagaaagcccagaca
ggctactga
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