Larimichthys crocea (large yellow croaker): 104929192
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Entry
104929192 CDS
T04659
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X3
KO
K06252
tenascin
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104929192 (tnr)
04518 Integrin signaling
104929192 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104929192 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104929192 (tnr)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104929192 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF_Tenascin
FN3_Tor_3rd
EGF_2
Fn3_Dep-1_2nd
Interfer-bind
DUF4998
GH101_dom-5
DUF7949
Motif
Other DBs
NCBI-GeneID:
104929192
NCBI-ProteinID:
XP_019117827
LinkDB
All DBs
Position
XII:13773341..13932273
Genome browser
AA seq
1386 aa
AA seq
DB search
MQLARHHHRATVPITGCLLALALFLALQGATHAAPSGDNKLVRTTRVRRQTPGGDQSPSA
FSANQTLREQPVVFNHVYNINVPLESLCSVDLDASAPPDPGDGSRAELGSGPSMEGPMDP
TGPTEYTEQTLDADSQVTFTHRINIPKAACGCPATPTIQQLATRVEMLEREVSMLRAQCG
SGCCGESSAMGRLDFVPGCSGHGSFSFDLCGCICEEGWTGKNCSEPRCPDDCSGQGVCVE
GECVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLC
INGTCQCRPGYVGEDCSLVYCANNCSKKGVCKDGFCSCQDGFAGDDCNSVAPAMNLRVRG
VTDQAIDLEWEGSVVLTDFLVTYTPSSAGGVQLEIRIPGNTTTCVISGLEAGMEYNINVF
AVINNSISVPASITVSTYLSNPDGLVFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDG
GMTAQLPSTITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATVTTLIDGPTQLIVRDVS
DTVAFVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVSVSG
VRKGNESGSISTEFTTALSFFSEIDAPKNLWLVSKTSTTLELEWDNSEAEVEDYQVVYST
LAGDQYNKVIIPRNEGATTKTTLTDLLPGTEYGIGISAMKGKNQSTPATMNARTDLDVPM
DLTVTASTDNTITLVWGVVQGPIDHYKVTYTSSSGYTTELTVPKDVTTTTLTDLEPGTEY
TITVAARRGRQQSTAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAPAPPADLFILSYSS
ADGTDTSKVTLDGSKTRSLVQGLLPSTPYTISLITIQGDVTSEPITASLTTGMDPPKEMT
VSDVTEDAVTISWIKPLAPFEYYKLSYQSAKGRVDSVVIDSDVTNYTLSSLFPATEYEIS
LNAVRGSQESKVVSTSVFTAMDMPAELTALNITPQGALLRWNPPLSSVDNYVLTLTHNQV
TADTFLVEGNKQEHQLSNLKPSTSYSVALYATKGPLTSGTVITNLQTPMDAPLNLTASEV
NHRSALISWQPPIAEIDNYMLTYKSTDGNRKELILDAEDTWIRLEGLAETTEYTVKLQAA
RGLDTSAVVSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTIYINRDPSQGVQVYCDMTT
DEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQRIAAQGRYELRIDMKD
GQESVYANYDKFSIGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCAL
SYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKR
RRSVPV
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgcaactggcacgacaccatcacagggccactgtgcccataacaggctgcctcctggct
ttggctctgtttcttgcactacagggtgccactcatgctgctccatcaggagacaacaag
ctggttcgtaccaccagagtgaggagacagacaccagggggggatcagtccccctctgct
ttctcagccaaccagactctgcgggagcaaccagtggtctttaaccatgtgtacaacatc
aatgtacccttagagtctctgtgctctgttgacctagatgcatccgcaccacctgaccca
ggtgatggttctcgagctgagctggggtccggcccttcgatggagggtccaatggatcca
actggaccaacagaatacaccgaacagacgctagatgctgacagccaggtaacgtttact
caccgcatcaacatcccaaaagctgcatgtggctgtccggcaacacccacaattcagcag
cttgccaccagggtggagatgctggagagagaagtttcgatgctcagagctcagtgtgga
tctggatgctgcggggagagctcagccatgggtcgtttggactttgtcccaggctgcagt
ggccatggcagtttcagctttgacctatgtggctgcatctgtgaggaaggttggaccggc
aaaaactgctctgagcctcggtgcccggacgactgctctggccagggggtgtgtgttgaa
ggggagtgtgtgtgtgaccgtgactttggaggcgacaactgttcagagccgcgttgccct
tcagactgttcgggtcgcgggttgtgcatcgatggcgagtgtgtgtgcgaagagtccttc
accggggaagactgcatggtggggagatgtctcaacgactgctcagaccagggactgtgc
atcaacgggacgtgccaatgccggcccgggtatgtgggagaggactgctcactggtctac
tgtgccaacaactgcagcaagaagggtgtctgcaaggatggattctgttcttgccaggat
ggctttgctggagatgactgcaactctgtggcaccggccatgaacctgagagtacgaggc
gtgactgatcaggctattgacctggagtgggagggctcagttgtgctgacagacttctta
gtgacctacacgccaagcagcgctggaggtgtccaattagagataaggattccaggcaat
accaccacctgcgttatctcaggcttggaggcaggcatggagtacaacatcaatgtgttc
gctgtcattaacaacagtatcagcgtccctgccagcatcactgtttcaacctatctctcc
aatccggatggtttagtcttcaaatccatcacagagacgtcagtggaagtccagtggcaa
ccgttctactattccttcgatgggtgggagatcagctttatccctaaggacaatgatgga
ggcatgactgctcagctgcccagcaccatcacttcctttgtgcagaccggtttgagacca
ggggaggagtatactgttaacctggtggcgctccgagaccagggtcgaagccagccagtc
actgctactgtcacaacattgattgacggccccacacagctaatcgtgcgggatgtatca
gacactgtagcgtttgtagagtggacaccaccaaaagcaaagattgatcagattgtgttg
cgttacggcctggtgggaggagagggtccacggaccaccttccgcctccagcccacactc
agccagtactccctgcaggttctgcgtcctggctcacgttacgaagtgtctgtgagcggt
gtaaggaaaggaaatgagagcggatctatttccactgaatttactactgctttatcgttc
ttctcagagatcgatgcccccaagaacttgtggctcgtgtccaagacctccacgaccctg
gagcttgaatgggataacagtgaggctgaggtggaggactaccaggtggtgtacagcact
ttggcaggagaccagtacaataaagtcattataccacgtaatgagggagccaccactaag
accactctcacagacctgctgccgggcacagagtacggcatcggcatttccgccatgaaa
ggcaagaaccagagtacaccagcgacaatgaacgccaggacagatctggatgtgccgatg
gatctaactgtaacggcttctacagacaacactataaccctggtatggggcgtggtccag
ggccccattgaccattataaggtcacctacacgtcctcttctgggtacactacagagctg
acagtgcctaaagatgtaaccaccaccacgctgacggaccttgagcctgggactgagtac
accatcactgtagcagcaagaagaggaaggcagcagagcactgcagctaccatagacgcc
ttcacaggaatcaggcccgtaacccacctctacttgtcagaggtgacgtcagactctgtg
tcggtggcgtggagcgccccagcaccacctgctgacctcttcatcctgagctacagctct
gctgatggaacagacacctctaaggtgacactggatggctccaagacacggtcactggtc
caggggctgctgccgtccactccttacaccatcagtttaatcacaatacagggggatgtt
acctctgagcccattacagcatcactcactacaggcatggacccaccaaaagagatgaca
gtgtcagatgtgacagaagatgcagtgactatctcttggatcaaaccattggctcccttt
gaatactataagctgtcctaccagtcagccaaaggtcgagtggacagcgtggtgattgac
agcgacgtgaccaactacaccttgtccagcctttttcctgctacagaatatgagatcagc
ctcaacgctgtcagggggagtcaggagagcaaagtggtcagcacctccgtcttcacagcg
atggatatgccagccgagttgacagctctaaacatcactccacaaggagccctgctgagg
tggaatcctcctctttccagtgtcgacaattatgtgctgactctcacacacaaccaggtg
acagctgatacattcctcgtagaaggcaacaagcaggagcaccagctgtccaaccttaag
ccaagcaccagctactccgtagccctatatgccaccaaaggacccctcaccagcgggacc
gtcatcaccaacctccaaacgcccatggacgcgcccctgaatctgacagccagtgaagtg
aatcatcgtagcgctctcatctcctggcaaccaccaattgcagaaattgacaactacatg
ctcacctacaagtcaaccgacggcaaccggaaagagctgatcctagatgcagaggacaca
tggattcgactagagggactagctgagaccacagagtacactgttaagctccaggctgca
agaggacttgataccagtgctgtagtctccactaccttcactacagggagtcgtctattt
gcaacacctcagaattgtgcccaacacctgctgaatggcgagacgctgagcggcgtctac
accatttacatcaacagagatcccagccagggtgtgcaggtgtactgcgacatgaccact
gatgaaggaggctggattgtattccagcgtcgtcagaatggcctgacagacttttccagg
aagtggagtgactatcgggtcggctttggaaacctggaggatgaattctggcttggtcta
gacaacattcagaggattgcagctcaaggccgctatgagctgagaattgacatgaaggac
ggacaggagtcagtctatgccaattatgacaaattctccattggagatgcgagaaacctc
tacaagctcaggataggagagtacaacggcaccgctggtgactctctgagctaccaccag
ggccggcccttctcgacaaaagacagagacaatgacatcgctgtcactaactgtgccttg
tcttacaaaggagcctggtggtacaagaactgccaccgggccaacctcaatggcaaatat
ggcgagtccagacacagtcagggtattaactggtaccactggaaaggccacgagttctct
attcctttcgtggagatgaaaatgaggccattcaacttccgtagcatcagcagcaagagg
aggcggtctgtccctgtataa
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