Larimichthys crocea (large yellow croaker): 104929212
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Entry
104929212 CDS
T04659
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104929212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104929212
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104929212
Spliceosome [BR:
lco03041
]
Complex C
Other components
Step II factors
104929212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104929212
NCBI-ProteinID:
XP_027145585
LinkDB
All DBs
Position
XVI:complement(22538792..22548221)
Genome browser
AA seq
1218 aa
AA seq
DB search
MADGGGVDELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVIDLAEKQPAFDGFKALLLQ
NGAEFTDSLIGNLLRLIQTMRPPSKASTSKASEVLVKPKSEKEKLKELFPALCRPNDPAP
KKLLDEDDVKVAADAMKELEMFMPSVSGTDSKSSKSRSEKRRHSRSRSRSREKDRHRDRD
RDRDRDRDRKRRHRSRSRSRSRSRSRDRDRHRDRDRDRGKRSNKSSRWSERSPSPRKDQD
RDSDRWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRRE
GRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGEEIS
MRNPDRPSNLNLGHAPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDE
TGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSAL
AKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHA
FGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYL
AEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMT
DGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDA
VKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTG
QEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIA
ETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRL
YTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLY
TLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPK
DKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM
LGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALF
NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLY
NRYEEPNAWRISRAFRRR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcggaggagtggacgagctgtcccagctcgagtatctgtctctggtgtcc
aaagtctgcacggagctggacaaccatctcggaatcagcgacaaagatttagctgagttc
gtcatcgacctcgcggagaagcagccggccttcgacgggttcaaagctctgctgctgcag
aatggagccgagttcacggactctctcatcgggaacctgctcaggctcatccagactatg
cgacctccatccaaggcctccacgagcaaagcctcggaggttttggtcaagccgaagtcg
gagaaggaaaagttgaaggagctttttcccgccctgtgcagaccgaacgatccagcaccg
aagaagctgctggatgaagacgatgtgaaagtagcagccgatgccatgaaggagctggag
atgttcatgcccagtgtgagcggcacagactccaaaagcagcaagagcaggtcagagaag
agacgccacagccgaagtcgcagcagaagcagagaaaaggacagacacagagaccgagac
agggacagagacagagatcgggacaggaagaggcggcatcgctctcgctcgcgctccagg
tccagatctcgctccagagaccgcgaccgccacagagacagagacagagatcgcggcaag
agaagtaacaaatcttcccgctggagcgagcgctcaccgagccccagaaaagaccaagac
agagactctgaccgctggaaagacaaacacgtggaccgtcctccaccggaggagccgtct
gttggtgacatctacaacggcaaagtcaccagcatcatgcagtttggatgctttgtccag
ttggagggattaaggaaacgatgggagggtttggtccacatttccgagctgcgtcgagag
ggccgcgtggccaacgtggccgatgttgtcagcaaaggccaaagagtcaaagtcaaggtg
ctctcgttcaccggctccaagaccagcctcagtatgaaggatgtggaccaggagacggga
gaagacctgaatcccaacaggaggagaaacgttggcccggacggaggggaagagatctcc
atgaggaaccccgaccggccgagcaacctgaacctgggccacgccccggagctcgagcag
gacgacaccctggagcgcaagaggctcaccaagatttcagacccagagaagtgggagatc
aaacagatgatcgctgccaacgtcttgtccaaagaagagttccctgattttgacgatgag
acgggaatccttcctaaagtcgacgacgaagaggatgaagacttggagatcgagctggtt
gaagaggagccaccgttcctgaggggacacaccaagcagagcatggacatgagtcctgtg
aagatcgtcaagaatccagatggctctctgtcccaggcggccatgatgcagagcgctctg
gctaaggagagacgcgagctgaagcaggctgcacgggaggcagagatggactccatcccc
atggggctgaacaaacactgggtcgacccgctgccagacgctgatggtaggcagattgca
gccaacatgagaggcattggcatgatgcccaatgacatcccagagtggaagaagcatgct
tttggaggcaacaaggcctcttatggaaagaagacccagctctccatcctggagcagagg
gagagtctgccaatctacaagctgaaggagcagctcatccaggcggttcacgacaaccag
atcctgattgtgattggagagacggggtccggtaagaccacgcagatcactcagtacctg
gcggaggcgggttacaccaccagggggaagatcggctgcacgcagccccgtcgtgtggcc
gcgatgtctgtggccaagagagtctctgaggagtacggttgctgtctgggacaagaggtg
ggttacaccatccgatttgaggactgcaccagccctgagacggtgatcaagtacatgaca
gacggtatgctgctgagagagtgtctgatcgactccgagctgggtcagtacgccatcatc
atgttggacgaagctcacgagaggacgatccacactgacgtcctgtttggtttgctcaag
aagacggtgcagaaacgcacagacatgaagctcatcgtaacgtcagccacactggacgcc
gtgaagttctctcagtatttctacgaagctcccatcttcaccatcccaggaagaacttat
ccagtggaggttctctacaccaaagaacctgagacggactacctggacgccagtctcatc
accgttatgcagatccacctgaccgagcctccgggcgacatcctggtgtttctgactgga
caggaagagatcgacaccgcctgtgagatcctgtacgagaggatgaagtcgctcggtcct
gatgttcctgaactcatcatcctcccggtttattctgccctgcccagtgagatgcagacc
aggatctttgaccctgcacctccaggcagcagaaaggtcgtcatcgcaacaaacattgca
gagacgtctctgaccatcgatggaatctactacgtggtcgatcctggcttcgtcaaacag
aaagtgtacaactctaagacgggcatcgaccagctggtggtgactcccatctcacaggct
caggccaagcagagggcaggacgagccggcagaaccggtccagggaagtgttacagactg
tacacagagagagcctacagggacgagatgctgaccaccaacgtgcccgagatccagaga
accaacttggccagcactgtgctgtctctgaaggcgatgggcatcaacgacctgctgtcg
ttcgacttcatggacgctcctcccatggagactctgatcacagccatggagcagctctac
acgctgggagctctggacgacgaaggcttactcacacggctgggtcggcggatggcagag
tttcctctggagcccatgctgtgtaagatgttgatcatgtctgtccacctgggctgcagt
gaagagatgctcaccatcgtgtccatgctgtcagtgcaaaacgtcttctacaggcctaaa
gacaagcaggccctcgctgaccagaaaaaggcaaagtttcaccaacccgaaggcgatcac
ctgaccctgctggccgtctacaactcctggaagaacaacaagttctccaacccgtggtgt
tacgagaacttcatccaggctcgctccctgcgcagagcccaggacatccgcaaacagatg
ctgggaatcatggacagacataaactggacgtggtatcttgtggtaaagccaccgtgcgg
gtccagaaagccatctgcagtggcttcttcaggaatgcagccaaaaaggatcctcaggag
ggttaccgcacactcatagaccagcaagtcgtgtacatccacccctccagtgctctgttc
aaccgccagcctgagtgggttgtttaccacgagttggtgctgaccaccaaggagtacatg
cgggaggtgaccaccatcgacccccgctggctggtggagttctcccccgccttcttcaaa
gtgtccgaccccacgcgcctcagcaagcagaagaaacagcagcgcctcgagcctctgtac
aaccgctacgaggaacccaacgcctggaggatctctcgcgccttcagacgccgctga
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integrated database retrieval system
