Larimichthys crocea (large yellow croaker): 104929439
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Entry
104929439 CDS
T04659
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
lco04137
Mitophagy - animal
lco04144
Endocytosis
lco04340
Hedgehog signaling pathway
lco04350
TGF-beta signaling pathway
lco04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104929439
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104929439
04350 TGF-beta signaling pathway
104929439
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104929439
04137 Mitophagy - animal
104929439
09144 Cellular community - eukaryotes
04520 Adherens junction
104929439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104929439
04121 Ubiquitin system [BR:
lco04121
]
104929439
03029 Mitochondrial biogenesis [BR:
lco03029
]
104929439
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104929439
Membrane trafficking [BR:
lco04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
104929439
Autophagy
Mitophagy
Other mitophagy associated proteins
104929439
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
HECT type E3
104929439
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
104929439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
104929439
NCBI-ProteinID:
XP_027141644
LinkDB
All DBs
Position
XII:26737070..26784733
Genome browser
AA seq
772 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGCKYQRLDLN
KLSPNDSDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNH
ITRTTQWERPTRPASEYSSPGRPLSCIVDENTPISTNGATPTTALPPSGGDQRAQERRVR
SQRHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCE
ELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSPNGSRGGIESQNV
SRQNQLKDQAQQALVSPGQLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGHCRIE
VSREEIFEESYRQVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGL
FQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKP
ITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTQD
TKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKIDIND
WKSNTRLKHCTPDSNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR
LFTIHQIDASTNNLPKAHTCFNRIDIPPYEHYDKLYDKLLTAIEETCGFAVE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaggagtccggcggaacggcccagtgaagctccgactaacagtcctctgc
gccaaaaacctggtgaagaaagatttcttccgcctccccgatcctttcgccaaggttgtt
gtggacggctcggggcagtgccattccacagacactgtgaggaacacgctcgacccgaaa
tggaaccagcactatgacttatacatcgggaaatcggactcgatcaccatcagcgtgtgg
aatcacaagaaaatccacaagaagcaaggggctgggttcctgggctgtgtccgccttctg
tccaacgctatcaaccgccttaaagacacgggctgtaagtaccagagactagacttgaac
aagctgagtcccaatgacagcgacacagtcagaggccagatagtggtgagcctgcagtct
agggaccggataggcacaggaggccccgtggtggactgcagtcgactgtttgacaatgat
cttccagatggctgggaggagaggaggacagcgtctggacggatccagtacttgaaccac
atcacacgcaccacacagtgggagaggcctaccaggccggcatcagagtactccagcccc
ggccggcctctcagctgcatcgtggacgagaacacgcccatcagcacgaacggcgccacg
cccaccacggcgttgccgcccagtggcggtgaccagcgcgcccaggagagacgggtccgc
tcccagaggcaccgcaactacatgagcagaacccacctgcacacgcccccggacctccct
gagggatatgagcagaggaccacgcagcaaggccaagtgtactttctccacactcagacg
ggtgtcagcacgtggcatgaccccagagtaccgagagatctgagtaatgtgaactgtgag
gaactgggtcctctgcctcctggatgggagatacggaacacagccaccgggagggtttac
tttgtcgaccacaacaaccgaaccacgcagttcacggacccgcgcctctccgccaacctg
catctagtcctaaatccaagccccaacggttctcgcggaggcatcgaaagtcagaacgtc
agtcgtcagaaccagttgaaggatcaggcccagcaggctctggtgtcccccggtcaactc
ccagaggaggccgagtgcctcacggtgcccaagtacaagagagaccttgttcagaagctc
aagatcctccgccaggaactgtcccagcagcagcctcaggctggccactgccgcatcgag
gtgtcccgcgaggaaatctttgaggaatcgtaccgacaggtgatgaagatgaggccgaag
gacctgtggaagaggctgatggtgaagttcagaggagaggaggggctggattacggaggc
gtggccagggagtggctctacctgctgtcccatgagatgctgaacccgtactacggcctg
ttccagtactcccgtgacgacatttacacgctgcagataaacccggactctgctgtcaac
cctgagcacttgtcgtactttcacttcgtgggccgtatcatggggatggcggtgttccac
ggccactacatcgacggaggcttcactctgcccttctacaaacagctgctgggtaaaccc
atcaccctggacgacatggagtccgtggacccggacctgcacaacagcctcgtgtggatc
ctggacaacgacatcacaggtgtgctggaccacaccttctgtgtagaacacaacgcctac
ggagagatcatccaacacgagctcaagcccaacggtaagagcatccccgtcacccaggac
accaagaaggagtacgtccggctctacgtcaactggcgtttcctgcgaggcatcgaggcc
cagttcctggccctgcagaagggcttcaacgaggtcatcccccaacacctgctgaaggct
ttcgacgagaaggagcttgagctgatcgtatgcggcctgggcaaaatcgacatcaacgac
tggaagtccaacacgcggctcaaacactgcaccccggacagcaacatcgtgaagtggttc
tggaaagccgtggagtccttcgacgaggagcgaagagcgcggctgctgcagtttgtcacc
ggctcctccagggttcccctgcaaggcttcaaggcccttcaaggtgccgccggcccgcgg
ctcttcaccatccaccagatcgatgccagcaccaacaacctgcccaaagcgcacacctgt
ttcaaccggatcgacattcctccgtacgagcactacgacaaactgtacgacaagttgctc
actgccatcgaggagacgtgcggcttcgccgtcgagtga
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