KEGG   Larimichthys crocea (large yellow croaker): 104929524
Entry
104929524         CDS       T04659                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03013  Nucleocytoplasmic transport
lco03015  mRNA surveillance pathway
lco03040  Spliceosome
lco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104929524 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    104929524 (alyref)
   03015 mRNA surveillance pathway
    104929524 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    104929524 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104929524 (alyref)
   03041 Spliceosome [BR:lco03041]
    104929524 (alyref)
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104929524 (alyref)
    TREX complex
     104929524 (alyref)
Spliceosome [BR:lco03041]
 Complex C
  Other components
   EJC/TREX
    104929524 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104929524 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 104929524
NCBI-ProteinID: XP_019113125
UniProt: A0A0F8AU43
LinkDB
Position
XII:1367934..1370910
AA seq 277 aa
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGGSGGGRGGGGGAGRLGVSGGGGGGFGGR
GGGSGPMRSRQNLNRGRGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETG
GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQ
YNGIPLDGRPMNIQLVTSQIDTQRRPMQGLNRGGGGMNRNRGGGFGGMQRGRGGRGAGGA
RGRGRGGRGGGGTSKQQLSAEELDAQLDAYNARMDTS
NT seq 834 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacattatcaagcagaacaggcagcagcga
ggcggaggccgcggaggaagaggtcgaggccgcggaggctcaggcggcggccgaggcggc
ggaggaggcgctgggcgtcttggagtcagcggcggaggaggaggaggatttggaggccga
ggcggcggatccggccccatgaggagccgacagaacctgaaccgcggtagaggcagacca
acgccttacagcaggcctaaacagcttcccgataagtggcagcatgacatgtttgacaac
ggcttcagcggcttcaatggcgctgctgggggcggcggaggagccggtgtggaaactgga
gggaagctcctcgtctccaatctcgactttggggtgtcagatgcagacattcaggaactc
tttgctgaatttgggactctgaagaaggctgcagttcattacgaccggtcggggagaagc
ctgggaactgcagacgtccacttcgaaaggagggcagacgctctgaaggccatgaaacag
tacaacggaatcccactcgatgggcgacctatgaacatacaactcgtcacatcacagatc
gacacacagaggcgacctatgcaaggtctgaacagaggtggtggaggcatgaacagaaat
cgtggcggcggcttcggaggcatgcagagaggacgtggcggacgtggtgcaggcggtgcc
agaggaaggggtcgaggtggccgaggaggcggtggcactagtaagcagcagctgtcagca
gaggaactcgacgcccagttagacgcctacaatgccaggatggacaccagctaa

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