Larimichthys crocea (large yellow croaker): 104929583
Help
Entry
104929583 CDS
T04659
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104929583 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104929583 (smg5)
03032 DNA replication proteins [BR:
lco03032
]
104929583 (smg5)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104929583 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
104929583 (smg5)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
104929583 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
104929583
NCBI-ProteinID:
XP_019134677
LinkDB
All DBs
Position
XIII:complement(33672426..33689433)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDAIIGSKASYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPTHGGAHHSPSEEEEEQQQQHADSSCPVLPDTLV
FKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAETQVPPLHT
DAPDDPEMRDLSAPPTDRPDEKPLQNGSLEQEDEEEEKDEDGSERVGTKKQSSVEEQRKL
EEEKQRQKKKYTRLSRLRRRRCARKDTRGEDESDLSEGFESEDDEDDDEERRGHADPTSG
VTAGTPPNPPPIRKESKRDHLGEEGSWGSGSEEEEEEEEGGTAFDVETDSDMNSQESRSD
LEDIEDTENSDNLEGQAREHQDEEEDEDHPKEEGGDRDGDTPPTTNGPLNPSDSSISSNL
QAMSSQLFQAKRCFRLAPTFSNMLLRPQASSSSGIPTPTDASAPPSQETPPPPGDSPCEM
NPGTANGTNENDLDSDSEGSQHSTQSVHSEKTLLEKLEILTNQGLIQVVKVFIDWLRTNT
DIILMCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLNAEVTELLNECEQPGLVQSLLLP
EDLALRHLPALNVAHRRLDFTRRNPSLSPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPE
AGIFTSISQSEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKA
QSSMSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKEIAGARDGIRFL
ESEFRKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGM
VTILTGHQVEELCTRSSAMKAAIQAAGSAGMELKNITEFYRQWKEIG
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccggggcaggacagcgagccggaggcgaaggtgctcctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgccatcatcggcagcaaagcgtcc
tacagagaggtcttcaagccggagaacatcagccttcgcaacaagctgcgggagctttgt
gtgaagctgatgttcctccaccctgtcgactacggccgtaaggctgaggagctgctctgg
aggaaggtctactacgaagtcatccaggttatcaagaccaacaagaagcacatccacagt
cgcagcgcgctggagtgtgcctaccgtacacatctgatcgcaggcgtgggcttctaccag
cacctgctgctctacatccagtcacactaccagctggagctacaggactgcatcgactgg
acccacgtcacggacccactgatcggccgaaagaaaccagtgtcagccacccccaaggag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagcccgt
tatcagaacgaacttgcaggggtggaggccgagcagctggcagaaaggttttaccatcag
gccttgtctgtcatgccacacgtaggaatgccttttaaccaactgggcacactggctggg
agcaagttctacaacgtcgaagcgacctactactacctacgctgcatccaatcggacgcc
cccttcgagggcgcatacggcaacctgaagcgcctgtttgataaagccgccaagatgtac
caccaggtcaagaagcaggaaatgaagaagctgtctccgtctcgacaaagatcaaaagac
attaagcgcctcctggtgagcttcatgtaccttcagagtctgctgcagcccaagaacagc
ctaatggagacggagctgacgtcgctctgtcagtcggtgctcgaggacttcaacctggtg
ctgttttacctcccgccgccgacgcacggcggcgctcaccactcccccagcgaggaagaa
gaggagcagcagcagcagcatgccgacagctcgtgccccgtgctgcccgacaccctcgtc
ttcaagatggtggtcacttgtctgatggtggtgcacagccttaagagaggaggatcgaag
cagtacagcgcgtccatagcttttactctggcgctgttctcccatctggtgaaccacgtc
aacatccggctgcaggctgagctggaggaagcggagacccaggtgcctccacttcacact
gacgccccagatgacccagagatgagagatttgtcagctccaccgaccgaccgccccgac
gagaagcctctgcagaatggctccctggagcaagaagacgaggaggaggagaaggacgaa
gacggcagcgaaagggtcggcacaaaaaagcaaagcagcgtggaagaacagcgcaagttg
gaagaagagaaacagagacagaagaagaagtacacccgcctctccagactccgcagacgc
cgctgtgcccgcaaggacacccgcggggaggacgaaagcgacctgagcgaaggattcgag
agcgaggacgacgaagacgacgacgaagagaggaggggtcacgctgatccgacaagcggc
gtcacggcgggtaccccgcccaatcctccacctatcaggaaggagtccaagagagatcac
ctgggtgaggagggcagctgggggagtggctcagaggaagaggaggaggaggaagaagga
gggacggcgtttgacgtagagaccgactcggacatgaacagccaggagtctcgctcagac
ctggaagacatcgaggacacggaaaactctgacaacttggagggtcaggcgcgggaacac
caggacgaagaagaggacgaagaccaccctaaagaagaaggaggcgacagagacggcgac
acacctccgaccactaacgggcctctcaatcccagcgactccagcatcagcagcaacctc
caggcgatgtcctcgcaactcttccaggcaaagcgctgcttccgcctcgcgccgaccttc
agcaacatgttactgaggcctcaggcctcatcttcttcggggattcccacccctactgac
gcctctgctcctccttcccaagagacgccccctcctcctggggattcaccctgtgaaatg
aaccctggcaccgccaacggaaccaacgaaaacgacttggactccgattccgaaggcagc
caacacagtactcaatcagtacacagtgagaaaaccctcttagagaagctggagatcctg
accaatcaggggttgatccaggtggtgaaggtctttatcgactggctaaggacaaacacc
gacattattctcatgtgtgcacagagttctcaaagcctgtggaaccgactctctgtgctg
ctcaacctgctaccagacggtagcaagatgctcgaggctgagctcggcctgaacgcggag
gtgacggagctgttaaatgagtgcgagcagcccggtttggtccagagtctgctgctgcct
gaggatttggctctgcggcacctgcccgctctcaacgtagctcaccgacgccttgatttt
actcgccgcaacccttccctcagtccactacaggagtgcgtcgtgcgagtctgctgcatt
cgcagttttggccacttcctaacaaatctccagggcaacgtgctgcacttcaacccggag
gcgggaatcttcaccagcatcagccagtccgagcaggacaatctggtccagcaggccaag
gcccagttccgaatggctgaagaggaagctcgtcgaaaccgcttaatgagggatatggct
cagctccgactacagttggaggtgtcgcagctagagggcagccttcagcagcctaaggct
cagtcatccatgtctccctacctggtgccagacacagctgctctctgccaacatctgaac
ctcatccggcagctggccggcagcggctgcttcatcattatcatcccacggacagtgatc
gatggactcgacaggttgaagaaggaaattgccggtgcgagggatggcattcgcttcctg
gagtctgagtttcgcaaaggcaacaggtacatccgctgccagaaagagtcgggtcgaagt
tttgaaagagataagctgaaacgtcaggacatcgaagcctggcatttatacaagatggtg
gacagttgtcgtcagctaaccgtctcccagagcaacggagatgaagacacggccggcatg
gtgaccattctcaccggccatcaggtggaagagctttgcactcggtcatcagcgatgaag
gcggcgattcaggcggcgggctccgcgggcatggagctgaagaacatcacggagttctac
cggcagtggaaggagatcggctga
DBGET
integrated database retrieval system
