Larimichthys crocea (large yellow croaker): 104929622
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Entry
104929622 CDS
T04659
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104929622
Membrane trafficking [BR:
lco04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
104929622
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
104929622
NCBI-ProteinID:
XP_027137131
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All DBs
Position
VIII:complement(30279353..30347485)
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AA seq
2035 aa
AA seq
DB search
MMEDKSHRVADYFVVAGLTDPSKPLDQEIHFDDVCHKLAKPKAPITDVAVVIRSMGEEAP
PGFTCIEETPTGHSADLNNGGLMAPQIFLCYRRGRDKPPLTDLGVLYEWKERLKQGCHLI
QTTPSGRPANISGNSSQRIYVTYRRAPESQPHTTLAVTDICIIIPSKGETPPHTFCKVEK
NLNSSMWGSSVYLCYKKSVAKTNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATI
ECWPANTKYSLPVFSTFVLTGASGEKVYGAAIQFYETFPQECLTDQQRSQLGLLNPDPHK
PSSSSSTSSVSSATATATNSSTNSTVTPRSVYTNKCICLLSHWPFFDAFRKFLTFLYRYS
ISGPHALPIEKHISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSTL
LQNLGPENAVTLLVFAVTEHKILVHSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLAL
ADVLSAPCPFIVGVDSRYFDLYDPPPDVSCVDLDTNTIFHNEDKRALTWKILPKKACKNL
MNVLSNLYQQLVDGQYRPDGLLELSMSDSSELSCGKSLHTLELEIQEAFLRFMAAILKGY
RSFLRPITQAPSEKATDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSD
KDASLAFFDDCVDKLYNSERSADKGGKVDSDRPEETRLIEIDESQRSEHTVFITPPELPP
LPDGEEYPLCYMYDGFPVLSLDLFDPVEGLRTPSSRLAARHSCPTSPAPMFRRTKQEIKS
AQKIAKKYSSIPQLWSKCLLRHCYGLWFICLPAYVKVCHSKVRALRTAYDVLRKMQAKKL
QPPDEVCYRVLMQLCGQYGQPVLAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSSTR
GGYFLWMKLRNVVLGVAQFKRALRRQAPLTQSPLSDGSDLDAVSHGSLDSSADNNLAEQQ
GPFAKVDPTDDRSSTAGRGGGSVGARALVAHSHRGGSELREATLHPGDQSDLGYNSLSKE
EVRRGDPNAPDAAPDKDDKKESDCSSLSETESAKGSKDCLPQLDVEVHSSFRSRGIVRSS
CPYDDSSCRPKSSASAGHVAGLLFTSSLDEIGEVHGNSLLRRHKSALEEVVGSASSGSAL
DWQGVRGRRLSGDTVGSSGSGTTVLGLGMSQGETDPDKIAGHLGADVKILSGANFSKNKR
PRSLALGGLEEAAAKAGGVRNRDHREEDEDMERLDSSDEDTSHTEDIFDLEDLDLDKPST
GGGVSSRKSNKSHSKVVERSASYGGVSTEASRGAVKRTGIQTGYDPLSLLAAESQTEQEN
EDQYPEGDEASTPSARRHLAREIELYMNHMGSPLSSRTPSLDLQDPASPLLLHPSSLSAP
RRASLPHSSPRSAAGVPRSRTFHPPSPSQNISRQRLWSSPPCRSSSTTPSPSPRPSPYRE
RTDGMSLVSPSPSSSSFALDTLLTPTLDVFKTSVFSAGKGVAEKASRWYSRLATYTTPTK
DGHGDRLSVSSLGVGDPDRSSLLDEEDCGESESSMVSPQKNGPMGPRRSPRRSPLCSRLD
SPTAGSSLGRPTSLLPGSVLSPPGFPLPDKSDLGSSRYTSNTSIFNNYAMELLISSCSRC
KTCDCLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDMRGPGRLFLKGSPSLD
EATTSTYSTSTGMDTGTSTLSTPCPTTAVSPPSPVIAVQECSGSGRTRSTRAESINIPTD
RRQGSPMARSVSAFGPLEEAPRLNRCVPTSGSLPSRLNEATDPLNMEWRLHNPEPVTVPY
LSPLVLWKELESLLENEGDPVITEADMVDHHPIIYWNLVWYFRRLDLPSNLPGLILTSEH
CNKDSQVPRHWMLEDSKHVLIQILWDNLKLHQDPIQPLYILWNTYRLNCTLLLENVGYPL
SKAVSEEEKPFSEELLQSVVKSIQRNDVSRPMAQLLQLLGQTLGVKRQRSLYRDILFLSL
VALGKDNIDIDAFDREYKLAYDRLVPSLVKLTHNCDRPPSTGVMECRRTFGEPYL
NT seq
6108 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacaaaagccatcgtgtagccgactactttgtcgtggccggtctgacagac
ccgtccaagccgttggaccaggagatccactttgatgacgtctgccacaagctggccaag
ccgaaggcgccgatcaccgacgtggcggtggtgatccgctcgatgggcgaggaagcgccg
ccggggttcacctgcatagaggagacaccgaccggccattcggctgatcttaacaacggc
ggactcatggcaccccagatcttcctgtgctacaggcggggtcgagacaagccgccactc
actgacctcggcgtgctgtacgagtggaaggagcggctgaagcagggctgccacctcatc
cagaccactccctccggacggccggccaacatcagcggcaattcctcccagcgcatctac
gtcacctaccgccgggcgccggagagccagccgcacaccaccctggccgtgacggacatc
tgcatcatcatcccgagtaaaggagagacgccgccgcacaccttctgcaaggtggagaag
aacctgaacagcagcatgtggggctcctccgtctacctgtgttataagaagtctgtggcc
aaaaccaacacaatagcctacaaagcaggtttattcagcagatatccagaggaggactac
gagtcgttccctctgcccgagtctgtccctctcttctgccttcccatgggggccacgatc
gagtgctggccggccaacaccaaatactccctccctgttttctccacctttgtcctcacc
ggagcctccggagagaaggtctacggtgctgccattcagttctatgagaccttccctcag
gagtgtctgactgatcagcagcgctcccagctcggtctcctgaacccagatccgcacaaa
ccctcctcatcctcatccacctcctccgtctccagcgctacagcgacagccaccaacagc
tccaccaacagcaccgtgaccccgcgctcggtctacaccaacaagtgtatctgtctgctg
tcacactggcccttcttcgacgctttccgcaagttcctcacattcctctaccgctactcc
atctccggccctcacgctctgcccatcgagaagcacatctctcattttatgcacaaagtt
cccttcccgtcctctcagaggcctcggatcctggtgcagctttctcctcacgacagtttg
atgttgagccagccagtgtcttctcctttaccgctcagcggtggtcggttttccacgctg
ctccagaacctcggaccagagaacgccgtcaccttgctggtgttcgccgtcactgaacac
aagatcctggtccactcgttacgacccgccgtgctgaccagcgtcaccgaagctctggtg
tctatgatcttcccgttccactggccgtgtccgtacatccctctgtgccctctggcgttg
gcggacgtgttgagcgccccctgtccgttcattgtgggagtcgactcgcgctactttgat
ctgtacgaccccccgccggacgtgagctgcgtggacctggacacaaacaccatcttccac
aatgaagataagcgagccctcacgtggaagatcctgccaaagaaagcctgtaaaaaccta
atgaacgtgctgagcaacctctaccagcagttggtcgacggtcagtaccgtcccgacggg
ctgctggagctgagcatgagcgattcgtccgagctgagctgtgggaagagcctccacacg
ctggagctggagatccaggaagccttcctgcgcttcatggcggccatcctgaaaggctac
cgctctttcttacggccgatcacccaggcgccctccgagaaagccacggacgccagctcg
ctctttgacttgcaagggttcttgaagagccgcgaccgctcgcaccagaagttctactcc
ctgatgaccaaaacccaaatgttcatccgctttatcgaggagtgctcctttgtgagcgac
aaagacgccagtctggccttcttcgacgactgcgtggacaaactctacaattcagagcgg
agtgcagacaaaggaggcaaggtggacagcgacaggccggaggagacccggctgatagag
attgatgaatcccagcgcagcgagcacacggtcttcatcacgccaccggagctgcctccg
ctgcctgacggggaggagtatccactgtgctacatgtacgacggtttcccggtgttaagt
ctcgacctgtttgacccggtggagggtctgcggaccccctcgtcccgcctcgctgccagg
cacagctgtcccaccagccctgcccccatgttcagacgcaccaagcaggagatcaagtca
gcccagaagatcgccaagaagtactcgtccatcccccagctgtggtccaagtgcctcctc
cgtcactgctacggcctgtggttcatctgtctgccagcgtacgtgaaggtgtgccactcc
aaggtgcgcgcgcttcgcaccgcctacgacgtcctcaggaagatgcaggccaagaaactg
cagcctccagacgaggtctgttaccgggtgttgatgcagctgtgtggacagtacggccag
cccgtcctggcagtcagggtcctctttgagatgaagaaagccggagttcaccccaatgcc
atcacgtacggttactacaacaaggcggtgttggagagcacgtggccctccagcaccaga
ggaggatacttcctgtggatgaagctgaggaacgtcgttctgggcgtggcgcagttcaaa
cgggcgctacggcgacaggccccgctcacccagagccctctgtcagatggcagcgacctg
gacgctgtgagtcacggcagcctggatagctctgccgacaataacctggccgagcagcag
ggccccttcgccaaagtagaccccactgacgatagatctagcacagccggccgtgggggc
ggcagcgtgggcgccagggccctggtggcccactcccaccgggggggctctgagctcaga
gaagccaccctccacccaggagatcagtcagatttgggttataactcgttgtccaaagag
gaggttcgcagaggagaccccaacgccccggacgccgccccggacaaagatgacaagaag
gagagcgactgcagctccctgtcggagacagagagcgccaaggggagcaaagactgcctc
cctcagctggacgtggaggtccactcctcgttcagatcccgcggcatcgttcgcagcagc
tgtccgtacgacgactcgtcctgcaggccgaagagctcggccagcgcaggccatgtcgcg
ggtctcctcttcacctcctccctggatgagatcggtgaggtccacggcaacagtttgctc
aggagacataagagcgccctggaggaggtggtgggcagcgccagcagcggctcggctctc
gactggcagggcgtgaggggccgcaggctgagcggcgacaccgtgggcagcagcggcagc
ggcaccaccgtcctcggactcggcatgagccagggggaaaccgacccggataagatcgcg
ggacacctgggcgcagatgtcaaaattctctctggtgccaacttcagtaagaataagagg
cctcgctcgctggctctgggagggttggaggaggcggctgctaaggcgggtggtgtcaga
aatcgtgatcacagagaggaagacgaggacatggaacgactggactccagtgatgaagac
acgagtcacacagaggacatttttgatctggaggatctggatttagacaagccttccaca
ggcggaggcgtcagctctcgtaagagcaacaaatctcacagtaaagttgttgaacgaagt
gccagctacggcggtgtgagcaccgaggcctccagaggagccgtgaagcgcaccggcatc
cagaccggctacgaccctctatccctgctcgcggcggagtcgcagaccgagcaggaaaac
gaggatcagtacccagagggtgacgaggccagcacgccgagcgcccgcaggcacctggcc
agggagatcgagctctacatgaaccacatgggcagcccgctgagcagccgcacacccagc
ctggacctgcaggacccggccagtcccctcctcctccacccctcctcgctctccgccccc
cgcagagccagcctgccccacagctccccccgcagtgctgccggagtgccgcgttcccgc
accttccacccgccctcgccctcccaaaacatctcacgccaacgcctgtggtcgtcgccg
ccctgtcgcagttccagcaccacccccagccccagccctcgacccagcccgtacagggag
aggacagacgggatgagtctggtgtcaccttcaccctcctcctcctctttcgccctggac
actctgctcacaccaacgctcgacgtttttaagaccagcgtgttctcggctgggaagggc
gtagcagagaaggccagccgctggtactcccgcctcgccacgtacaccacacccaccaag
gacggtcacggtgaccgcctgagtgtgtcctccctcggtgtcggagatccggaccgttcg
tccctgctggatgaagaggactgtggggagtcggagagctccatggtctctccgcagaag
aacggccccatggggccacgcaggagccccagacgcagccccctctgcagcagactggac
agccccactgcaggctccagcctcgggagacccacgtctctgctccccggaagtgtcctc
tcgccgcctggcttccctctgccggacaagtccgacctcggctcttcacgctacaccagc
aacaccagcatcttcaacaactacgccatggagctgctgatctccagctgttctcgctgt
aagacgtgtgactgcctcgtgtacgacgaggagatcatggccggctggacggccgacgac
tccaacctgaacaccacctgccccttctgtggaaaccccttcctgcctttcctcaacgtg
gagatcagagacatgcgaggacccggcaggctcttcctgaagggcagcccgtcactcgat
gaggcgaccacctcgacatactcgacctccacaggtatggacacagggacgtccaccttg
tccacgccctgtcctacgacagccgtctctcctccctcccctgtgatcgccgtgcaggag
tgctcggggagtggaaggactcgatcgaccagagctgaaagtatcaacatccccacagac
cgccggcagggctcgcccatggctcgcagtgtcagcgcctttggtcctctggaggaagcg
ccccgactcaaccgctgtgtgccgacgtccggcagcctgcccagccgcctcaatgaagcc
acggaccctctgaatatggagtggcggctccacaacccggagccggtgaccgttccgtac
ctgagcccgctggttctgtggaaggagctggagagtctgctggagaacgagggcgaccca
gtgatcacggaggccgacatggtggaccatcatcccatcatctactggaacctggtctgg
tacttcagacgcctggacctgcccagcaacctgcccggtctcatcctcacctccgagcac
tgcaacaaagactcccaggttcctcgtcactggatgttggaggacagtaaacacgtgttg
atccagatcctgtgggacaacctcaagctgcaccaggacccgatccagcctctgtacatc
ctctggaacacatacaggcttaattgtactctgttgttagagaacgtgggttaccctctg
tccaaggcggtctcggaggaggagaagccgttcagcgaggagctgctgcagagcgtggtg
aagagcatccagaggaacgacgtcagccggcccatggctcagctgctgcagctgctgggc
cagacgctcggggtcaagaggcaaaggagtttgtacagggacatcctcttcctgtctctg
gtggctctgggcaaagataacattgacatcgacgccttcgatcgcgagtacaagctggcg
tacgaccggctcgtgccgagcctggtgaagctgacccataactgtgaccgtcctcccagc
acgggggtgatggagtgccgcaggacgttcggagagccatacctgtaa
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