Larimichthys crocea (large yellow croaker): 104929695
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Entry
104929695 CDS
T04659
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104929695 (taf1c)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
104929695 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
104929695
NCBI-ProteinID:
XP_010742579
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MDYQFPQQLFPSFYNSGPPDSVLKHCAGRWGSYDRVRPQGGSGSLSSWTFTSRHQIRGET
WRQTEPVPVPLLSPKNSVLWPSTPPDPLEFTKHMQNFFMDYREDAFGCMSEILGEHFNFR
HGDQKPTRKDLRKKLPQKDSVNMWRVKEFLDVLQFEICQQSYHSRTLDQYTKLMSDVVPT
IPPRLLGSLLYEELTEQRDRMMFSEASTGGALAFVPFSPSCSSPQRGYLLYPGKQGMDRL
NFHRVALQHQRGSPSCVDASSSDPFSFQLKGPVRQISCASLLDDCCVAVRSDHLCGVWRV
SETNEPHLLQVVNTREVATCINASPHVLGEVLVASESGAAKLWTVGRGMQKVREEDGNLY
FNAKSSWRWCEFSAHPRVMVYADRTGVELTDMRMNPVNSHSLFRISNTSDCRSGERLFLS
RYLGDVHCFHHLITTQHSAYIMDERFPTVPMLKWDHMMQSPPMFCHVVPGSVSSGSAVGG
ARSTKVLLGSQHSQEIMLLQYSGGRAEACFSQGPPQALLRPRDSLKHLLVQIPHRLDTAT
DRLSSPAAGLTCIQNKGGGEADGEECICVLQLTEAGDIFYQILESEQPDTSRHPAAEEEP
PPQRAVQKLKKEATALRQPAEQLQTDSQQVVSDTSSDEGVIEPTQHPAQRLVPETPEREQ
RPLFSDSSSEDSESGGKGRHLKQLLQVIVNDNQESELDADVTNTEVVENSEEPSTVEEEY
GGSSSSRPVGPSTQQTPVKLSDSTLLTWKHWLQKLMRKAYGKKPRPHCPQHFKVKNKGLL
HLSVDGARDSTEEERVQSLRRNLKACMSNSSLLVNSAVSSSLEAQEILPMPKLVDTNAWV
DDLSHRLTLSWEGEEAWWAWWEGELGLNRDRKVAALRKKRRREKEKRRAAGRRLELSGSF
TSSISYQSEYQDDLSGSGWTSAASQGAAWSDSEGMLSEPDGFWESRTPVAVTPSSVQADS
PVSTSAASQRIRERPGDPQTPNSSHSQTQKPVSTPTSQRKNRRPLEDYLRSMFATQDERS
QHDAYFLEEGSNTQPPTVPSSSCQLRSNSQPVPVRNLRVDLSQDIFAGPSPSQSLSQSSQ
GRLRPSQASQPKKKSRMGF
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagtttccacagcagctttttccttcgttttataacagcggaccgccggac
tcggtcctgaaacactgtgctgggagatggggcagctacgaccgagtcagacctcagggc
ggctcgggttctctctccagctggacattcacatccaggcatcagatcagaggagagaca
tggcgtcagactgagccggtaccggttcccctcctgtcccctaaaaactctgtcctttgg
ccttcaacgcctcctgacccgctggagttcacaaaacatatgcagaacttcttcatggat
taccgggaggacgccttcgggtgcatgagtgaaattctgggtgaacacttcaacttcaga
cacggggatcaaaaaccaacgagaaaggatttgagaaagaaactaccacagaaagattca
gtcaacatgtggagggtgaaggagttcctcgatgtgctgcagtttgaaatatgtcagcag
tcgtatcactccagaacactggaccagtacaccaagctcatgtcagacgtggtgcctacc
atccctcctagactgctgggcagcctgctgtacgaggagctgacggagcagagggaccgc
atgatgttctctgaagcatccacagggggcgctctggcctttgtccccttctcaccgagc
tgcagcagccctcagcgtggctacctcctctaccctggaaaacaggggatggaccgcctc
aacttccacagagtggcgcttcagcaccaaagaggaagtccttcctgtgtggacgccagc
agcagtgacccgttcagcttccagctgaaaggcccagtcagacagatcagctgtgcctcc
ctgctcgatgactgttgtgttgctgtgcgatcggatcacctgtgtggagtctggagggtc
agtgaaacaaacgaaccccatctgctgcaagtggtcaacacgagagaggtcgccacctgc
atcaacgccagtcctcatgttttaggtgaagttctggtagcgagtgagagcggagcagca
aagctgtggactgtgggccgagggatgcagaaggtccgggaggaggacggcaacctgtat
ttcaacgccaagtcgtcgtggcgatggtgcgagttctcagcccacccgagggtgatggtg
tacgcagacaggacgggggtggagctcacagacatgaggatgaatcctgtcaacagtcac
agtctgtttcgtatcagcaacacctcagactgtcgcagcggggagagactttttctgtcc
agatacctgggagacgtccactgcttccaccacctcatcaccacgcagcactcggcctac
atcatggatgagcgattccccacagtgcccatgctcaagtgggatcacatgatgcagtcc
ccgcccatgttttgtcatgtggttcccggctccgtttcctctggctcggcagttggcggg
gctaggtccacaaaggttctgttgggctcccagcactctcaggaaatcatgctgctgcag
tactcaggaggaagagcagaggcctgcttcagtcaaggtcctcctcaggctctgctcaga
cccagagacagtctaaaacaccttcttgtccagatccctcaccgcctggacacagcaacc
gacagattgtcgtcacctgctgcaggtctgacttgtatccagaataaaggtggaggagaa
gcagatggtgaggagtgtatctgcgtcctgcagctgactgaagcaggagatattttttac
cagatcctcgagtccgagcagccggacacctctcgccatccagcagcagaggaagaaccg
ccgcctcagcgagcagtacaaaagctgaagaaagaagccacagcgctgagacaacccgca
gagcagcttcaaacggactcccagcaggtcgtatcagacacatcgagcgacgagggcgtg
attgagccgactcagcatccagctcagaggctcgtgcctgaaacaccagagagggaacaa
cgacccctgttctccgactcttcctccgaggactcagagtcaggaggaaaaggtcgacac
ctgaagcagctgctgcaggtcatcgtcaacgacaaccaagagagcgaattggatgcagat
gtgacaaatacagaggtggttgaaaattcggaggaacccagcactgtggaggaagagtat
ggagggtccagcagctcgaggccggtcggaccctcgacacagcagactccggtgaagctc
agcgacagcactctgctcacgtggaaacattggctccagaaactaatgcgaaaggcttat
ggaaagaagccccgcccacactgcccacagcattttaaagtaaaaaacaaaggcctcctc
cacctgtctgtggatggagcgagggattcgacagaagaggagcgtgtgcagagcctgagg
cgcaatctaaaagcatgcatgtccaactcctctctgttggttaacagtgctgtctcttcc
tcccttgaggctcaagaaattttacccatgccaaagctggtggacacaaacgcctgggtg
gatgatctcagccaccgcctgaccctctcctgggagggggaagaggcgtggtgggcgtgg
tgggagggagagcttgggctgaacagggacaggaaggtggcggctctgaggaagaagagg
aggagagagaaggagaagaggagagctgccggccggcgcctggagctgtccggaagcttc
acctcgtctatcagctaccagtcagagtatcaggacgacttgtccggttcaggctggacc
tcagcagcgagccagggagcggcgtggtcagactctgaaggtatgctgtctgagccagat
ggcttctgggagagcaggaccccggtagctgtaacaccttcgagcgtgcaagcggacagt
ccagtttccacgtcagccgcatctcaaagaatccgagagagaccaggcgaccctcagacc
cctaacagctcccactcccagacacaaaaaccggtctctacaccgaccagtcagaggaag
aacagacgtccactagaggactacctcagatctatgttcgccacacaggatgagcgctcg
cagcatgatgcctacttcctggaagaggggagcaacacgcagcccccaactgtgccctcc
tcctcctgtcagctccgcagcaactcccagcctgtccccgtgaggaacctcagggtggat
ctgtcccaggacatctttgccgggccgagtccctcccagtccctgtcccagagttcacag
ggtcgactgaggccgtcccaggcgtctcaacccaagaagaagtctcgaatgggattttga
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integrated database retrieval system
