Larimichthys crocea (large yellow croaker): 104929762
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Entry
104929762 CDS
T04659
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04140
Autophagy - animal
lco04148
Efferocytosis
lco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104929762 (vps18)
04148 Efferocytosis
104929762 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104929762 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104929762 (vps18)
Membrane trafficking [BR:
lco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104929762 (vps18)
Hops complex
104929762 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-RING_2
DUF1664
zf-RING_UBOX
zf-RING_Vps41
DUF2175
zf-ANAPC11
DUF5600
zf-rbx1
zf-C3H2C3
DUF4446
zf-RING_5
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
104929762
NCBI-ProteinID:
XP_010742665
LinkDB
All DBs
Position
XI:13860969..13866020
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHSRLSTANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPEK
INHLAVCSNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDESKVHKLFLDPTGSHLLISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGSETNTGPILVGTSQGIIFEAEISA
TEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTADIDLSINKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYE
DVFPDKFGALKKMIKDPVGGLVWIYTERAVFRYHVQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNRLGQLESDGNSIIFQETREEFRHFLSNPKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDQKLFYK
FSPVLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELT
VTEEAIHNYLLSLYAKYKPESLLWYLEQAGTHASEIHYDLKYALRLCAEHGYLQACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLTTYRQSRLEE
LQKKLAATTLSSKSRHRPVPKDEGDTASLGKGSAGTSREQIKSDIDDIIASECAYCGELM
IKSIDKPFIDPQKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgattcttgacgagtacgaggactcccaaaacaccaggcagagtgcgcagcag
cacagccgcctgtcgaccgctaacatcgggataactcactcaggctttgtgaatgtgaga
ctcgaggaggagaagccgatattcaacaagcagaggatcgacttcacaccgcctgagaag
atcaaccatctcgcggtctgcagcaatcagctgtgcatgagtctgggaaaggacaccctg
ctgaggattgacttggccaagccagatcagcccaatcagattgaattaggaaggaaagat
gaaagtaaagtgcacaaactcttcctggaccccactggctcccatctgctgatcagcctg
agcaccagtgagtgtctgtacctcaacaggaacacgcagaaggtgcgcagtctgtcccgc
tggagaggccacctcatcgagagcgtaggctggaacaagctgctcggcagtgagaccaac
acaggacccatcctggttggcacaagtcaaggcattatctttgaggctgagatctctgca
actgagggcagcctgttcaacactaacccagatcaatactttagacaggtccactcccta
gaggaggatggaaagcctgcgcctgtctgttgcttggaggtggagcgtggcttggagaac
aaatacttcatcatcgccactacccgcaaacgcctgttccagtttgtgggtaaggtggcc
gaggggtcagagcagcaaggctttagctccatcttcagccagaaccaggatctgctgccc
agtttccaggagttcccagccaacatgggctacagcgagatcaccttttacacctcgaaa
cttcgcacctcccctaaagcgtttgcttggatgatgggtaatggagttctttatggtcag
ctggactatgtcaggcctgactctctgctgagtgatgtgcaggtgtgggagtacaccgca
gacatcgaccttagcatcaacaagcccatctccattgtgctgacacagtttcacttcctg
ctgctgctccatgaccgagttaaggccatctgcactctgaatggacaggtggtatatgag
gatgtgttcccagataaatttggcgccctaaagaagatgatcaaggacccagttggcggg
ttagtgtggatctacactgagcgggcagttttccggtaccatgtccaacgcgaggccagg
gacgtctggcagatgtacatgagcatgaataagtttgatcttgccaaggagtactgccgt
gaccggccagagtgcatggacatggtgctggccaaagaggctgagcactgctttcagaac
aagcgatacctcgagagtgctaagtgctacgcactgacgcaaaactactttgaagagata
gcgctcaagttcatcgaagccaaacaagaggaagccctaaaagagttcttactgaagaaa
ctaaataatttgaaacagagtgagagaacgcagatcaccttgctggtcacctggttagcc
gagctctacctgaaccggcttggccagctggagagcgacggtaacagcatcatcttccag
gagacccgcgaggagttccgccacttcctcagcaaccccaagcacaaagagtgcctgttc
aacaaccgcagcaccatctacgaccttctggccagccacggcaacgtggacgacatggtt
tacttctctgtcgtcatgcaggactacgaaagagtgatatcccattactgccaacatgac
gactacagcgctgctctggatgtgctctccaagcactgtgatcagaagcttttttacaag
ttctcccccgtcctcatgcagcatattcccaaaaaagtggtggatgcgtggattcagatg
ggtaagcggctggacccaaagaagctcatcccagctctgatgaactacagccagatgggc
agcacccagcagatcagtgaaaccatccgctacatggagttctgtgtgtacgagctgact
gtgacagaggaggccatccataactacttactgtcgctctatgccaagtacaagccggag
tctctgctgtggtatctggagcaggcaggtacgcacgcctcagagatccattatgacttg
aagtacgccctcaggctgtgtgcggaacatggctacctccaggcctgtgtcctggtttat
aggattatggagctgtatgaggaggcagtggatcttgctttacaagtagatgtagacttg
gccaagtcatgtgcagacctgcctgaagatgatgaggagctgaggaaaaagctttggctg
aagatcgcccggcatgtggtgcaggaggagaaagatgtgaagaaagccatgaactgtctg
tccagctgcaacctgctcaagatcgaagacatcctgcccttcttcccagactttgtcact
attgaccattttaaggaggccatctgcagctccttggaggagtacaaccagcacatcgag
gagctgaagcaggaaatggaggaggccacagagagcgcaaaacgcatcagagaagacatc
caggaaatgaggaacaaatatggtgttgtggattcccaagaaaaatgtgctgcctgtgac
ttcccattgcttaacaggcccttctatctgttcctgtgtggacacatgttccactatgac
tgtcttttccaggaagtgacccctcacctgacgacctataggcagagtcgtctggaagag
ctgcagaaaaagctggctgcaaccacgctatcctccaagtcacgtcaccgcccggtaccc
aaggatgaaggagacactgccagtctgggaaagggcagtgcgggcacgagccgcgagcag
atcaaatcagacattgatgacatcattgcctctgaatgcgcgtactgcggcgaactgatg
atcaaatccatcgacaagccttttattgatccacagaaatttgaggaggagaaatccagc
tggttataa
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