Larimichthys crocea (large yellow croaker): 104929904
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Entry
104929904 CDS
T04659
Name
(RefSeq) laminin subunit beta-1 isoform X1
KO
K05636
laminin, beta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104929904
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104929904
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Lipase_GDSL
Motif
Other DBs
NCBI-GeneID:
104929904
NCBI-ProteinID:
XP_027127924
LinkDB
All DBs
Position
XX:complement(3459125..3480546)
Genome browser
AA seq
1781 aa
AA seq
DB search
MSLIIHLTTTLALWCLVGAQLPEFADVCTEGSCYPATGDLLIGRAHKLTVSSTCGLKKPE
RFCIVGHLEEEKKCFVCDSRQMYNEDTSHTTSHTIENLVTTFAHNRLKTWWQSENGVENV
TIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYNCPSSFPGVSEGP
LAKVDDIICDTHYSDIEPSSEGEVIFRVLDPAFKIDDPYSLRIQNMLKITNLRVKFLKLH
TLGDNLLDSRDEVTEKYYYSLYDMVVRGNCFCYGHASECAPIDGAQTGTEGMVHGRCVCN
HNTEGLNCEHCQDFYHDLPWRPAEGRNTHACKRCECNHHSTSCHFDLAVYMTTSNMSGGV
CDDCQHNTVGRQCEQCAPFYYQHPNRDLRDPHICEPCNCDPTGSLQGGLCDARTDVAVGM
ISGQCRCKANVEGERCDSCRQGHFGLGQGPHGCLPCTCNPLGTLPGGNSCDSHTGSCFCK
RLVDGHNCDQCLPQHWGLSNDMDGCRPCDCDQGGAVNNNCDSVSGQCECREHMFGRRCDQ
VESGFYFIALDHYTYEAEDAKYGPGVTLVPRPYPLDRSPTWTGMGFVNVPEGAFLEFAIN
NIPESMDYDILIRYEPQLPEQWEQVNVRVQRPVYHPPNYAAHCSNSIQSGDEQSISLPPG
SRHVLLLRPICFEQGLNYTVHLNLPLYSSGSDVPSPYTLIDSLVLIPRVSELDMFHGIDG
EGAWDTFQRYRCLESSQSVVKSPMTDICNDYIFSVSALLHKGAMACQCDPQGSLSAVCEP
SGGQCRCRPSVVGRNCDHCAPATFLFSPSGCRPCECDPLGSVSAFCHEATGQCECVQGAS
GRQCSHCLPGFWGFPQCRPCHCNGHSDYCHPQTGECQGCRDFTTGHHCERCLSGYHGDAE
LGSGGHCRPCMCPDGPRSGRQFSDSCYLLAHTNQLVCVCSPGYKGARCDQCAPGYFGNPL
VPGGRCMPCQCNNNIDMHDPGSCDARTGSCLKCLYHTEGYGCQHCKLGYYGNAATQNCRK
CMCYSMGTVPQACSSPNECQCNQHSGQCPCQPSVVGQSCDRCAPDTWNIASGTGCERCDC
DPVHSFGSSCNEVTGQCSCKPGFGGRTCRECRELFWGNPEVKCHACDCDPRGISSEQCHR
ATGQCTCVEGVSGPRCDQCARGYQGEFPNCERCHQCFAVWDTVVGELTNQTRRLEAQVTE
LQSTGVTAPYKELVGSLERNTKAVRDILESNPAAVKLEQIEELMHQITGVMSYLNGKLNT
TEETLNLLYSDANATDANMDALTDEANQLERSVKELIQQVYNAKNANIQGAMDTITAAHM
QSTMAELQANASTSDPGNTVEQSAAVRKATEDKLSGGQKEFDRKHQRNSQKLDKLSTELD
QFNLSLLSEKTCGGAAEGDSCSGSTCGGLGCVGQDGEPHCGGEGCGGLVTTSQTGLKSAK
DLDQAILEAMEEVDKLSRMVWEANTRANEAKVNAMEVLIKSNKSKERVEQSNEQLRNLIK
EIRDLLSNEKADVSVIEAVANEVLSLEMPTSTDKLHELTKEIKEKVGTLTSVETILSQSA
DDIQAAESLLKQAKAASEQASNMKETADVVKAALDETERAQTIAMDAIQLAQNNTKGTLD
LLISVESETAMSELKLSNTTGRLVQLEREVGLLRQNNLEVNHLAEAADLSTERAKVNAEE
AEQEFNVEVKDKFAEVEDLVEFKGESVLQARRRADEMQQEAKELLAQSSSKLQRLGELES
SYEANQQILEAKAAELAELEEKVRRILEEISHKVTLYSTCL
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcataatccacctcacgacaactctggccttgtggtgcctggtcggggcacag
ctgccagagtttgcagatgtttgcaccgagggtagctgttaccccgccacaggtgacctg
ctgatcggccgggcgcacaaactcaccgtctcctccacctgcggcctgaagaagccggag
cgcttctgcatcgttggacatctggaggaggagaagaaatgtttcgtgtgcgactccagg
cagatgtacaacgaggacaccagccacaccaccagccacaccatcgagaacttggtcacc
accttcgcccacaaccgcctcaagacctggtggcagtcggagaacggtgtcgagaacgtg
acgatccagctggacctggaggccgagtttcatttcacacaccttatcatgaccttcaag
acgtttcggccggctgccatggtgatcgagcgatcgatggactttgggaagacgtggcag
gtttatcgttacttcgcctacaactgcccgtcgtccttccccggcgtgtccgaggggccg
ctggccaaagtggacgacatcatctgcgacactcattactcggacatcgaaccgtcctcg
gagggagaggtaatatttagggtgctggaccccgccttcaagatcgatgacccctacagc
ctgaggatacagaacatgctgaagatcaccaacctccgggtgaagttcctcaagctccac
acgctgggcgacaacctgctcgactcccgcgacgaggtgacggagaagtactactactcc
ctctacgacatggtcgtccgcggcaactgcttctgctacggccacgcgtccgagtgcgcc
ccgatcgacggagcgcagaccggaaccgagggcatggtccacggccgctgtgtatgcaat
cacaacaccgagggactgaactgcgagcactgtcaggacttctaccacgatttgccttgg
aggccagcggagggacgaaacacccacgcctgcaagaggtgcgagtgtaaccaccactcc
acgtcgtgtcacttcgacctggccgtgtacatgacgaccagcaacatgagcggcggcgtg
tgcgacgactgtcaacacaacacggtgggacgacagtgcgagcagtgcgcaccgttctac
taccagcacccgaaccgagacctgagggacccccacatctgtgaaccgtgtaactgtgac
ccgaccgggtcgctgcagggcggactgtgcgacgcgcggaccgacgtggcagtcgggatg
atctcaggccagtgtcggtgcaaagccaacgtggagggcgagcgatgtgacagctgcaga
cagggacactttggactgggacagggacctcacggctgcctaccttgtacctgtaacccg
ctgggcacgctgcccggaggaaactcttgcgattcgcacacgggaagctgcttctgcaag
cgcctcgtcgacggacataactgcgatcagtgtctgccacaacactggggtttgtccaac
gacatggacggctgcaggccgtgtgactgcgaccagggcggggctgtcaacaataactgt
gactctgtctcaggacagtgtgagtgcagggagcacatgttcggacggcgctgcgatcag
gtcgagtccggtttctacttcatcgctctggatcactacacctacgaggcagaggacgcc
aagtatggacctggtgtgacgctggtaccgaggccttatcctctggatcgcagtccaacg
tggaccggtatggggtttgttaacgtgcctgaaggagccttcctagagttcgccatcaat
aacatcccagagtccatggactatgatatccttattcgatatgagccccagctgcccgag
cagtgggagcaggtgaacgtccgagttcagcgtcccgtctatcaccctccgaactacgcc
gctcactgcagcaactccatccagagcggagacgagcagtccatctctcttccacctgga
tccagacacgtgctgctgctgaggccgatatgtttcgaacaaggactgaactacaccgtc
cacctcaacctgcctctctactcgtcgggcagcgacgtcccgagcccgtacacactcatc
gactccttggtgctcataccgcgggtcagtgagctggacatgttccatgggatcgacggc
gagggagcgtgggatacgttccagcgctaccgttgtctggagagcagccagagcgtcgtg
aaaagccccatgaccgacatctgcaacgactacatcttcagcgtgtctgctctgctgcac
aaaggagccatggcatgccagtgtgaccctcagggttcactcagcgccgtgtgcgagccc
agcggaggtcagtgtcggtgtcgacccagcgttgtcggcagaaactgcgaccactgtgcc
ccggctacgttcctgttcagcccgagcggctgcagaccttgcgagtgcgacccgctgggc
tcggtcagcgccttctgccacgaggcgacaggccagtgcgagtgtgtccagggggcgtcg
gggcgccagtgttcccactgcctgccgggtttctggggcttccctcagtgcagaccgtgt
cattgtaacggccacagcgactactgccaccctcagaccggagagtgtcagggctgcagg
gacttcaccaccggacaccactgtgagaggtgtctaagtggttaccatggcgacgcagag
ttgggttcaggtggtcactgtcgcccctgcatgtgccccgatggaccgcgaagtggacgc
cagttttctgacagctgttacctgctggctcatacgaaccagctggtgtgtgtgtgcagc
cccggctacaaaggtgccaggtgtgaccagtgtgctcccgggtacttcgggaaccctctg
gtgcccggcgggcgctgcatgccgtgccagtgcaacaacaacatcgacatgcacgacccg
gggtcatgtgacgctcggacaggctcctgcctcaagtgcctgtaccacaccgagggctac
ggctgtcagcactgcaagctgggttactacggcaacgctgccactcagaactgcaggaag
tgcatgtgttactcgatgggcacggtacctcaggcctgttcgtcgcctaacgagtgtcag
tgtaaccagcacagcggtcagtgtccctgccagcccagcgtggtcggtcagagctgcgac
cgctgcgctcctgatacgtggaacatcgccagcgggacgggctgcgagcgctgcgactgc
gaccccgtccactccttcggatcgtcctgcaacgaagtcaccggacagtgctcgtgtaaa
cctggctttggtggccggacgtgtcgggagtgcagagagctcttctgggggaatccagaa
gtcaaatgtcacgcttgtgactgcgaccctcggggaatctccagcgagcagtgccatcgt
gcgacaggtcagtgtacctgcgtggagggtgtatccggcccaaggtgtgaccaatgcgcc
aggggctaccagggcgagttccccaactgtgaacgttgccaccagtgctttgctgtctgg
gacaccgtggtcggcgagctgaccaatcaaactcgacgtctcgaggctcaggtaacagag
ctccagagcaccggggtgacggcgccgtataaagaattagtcggcagcctggagagaaac
accaaggccgtcagggacatattagagagcaaccctgcagcggtgaagctggagcagatc
gaggagctgatgcatcagatcaccggcgtgatgtcctacctaaacggaaagctgaatacg
accgaggagaccttgaaccttctctacagtgacgccaacgccactgatgcaaacatggac
gcactgaccgatgaggccaaccagctggagcggagtgtcaaggagctgatacagcaggtg
tacaacgccaagaacgccaacatccagggtgcaatggacaccattacagctgcacacatg
cagtccacgatggcagagctccaggccaacgcctccaccagtgatcctgggaacacggtg
gagcagtcagccgcagtacggaaagccacggaggacaaactgagcggcggtcagaaggag
tttgaccgcaagcaccaaagaaactcgcagaagctggataaactgtccactgagctggat
cagtttaacctgtcactacttagcgagaagacgtgtggtggtgcagctgaaggtgacagc
tgctctggttcaacctgcggtggtttgggttgcgtcggccaagacggagaacctcattgc
ggcggagaaggctgtggaggcctcgtcacgacttcccaaactggtctcaaatcagccaaa
gacctggaccaggcgatcctggaagcaatggaggaggtggacaagctgtccaggatggtg
tgggaggccaacacccgcgcaaacgaggctaaggtgaacgccatggaggtgctgattaaa
tccaacaagagcaaagagagagtggagcagagcaacgagcagctccgcaacctcatcaaa
gagatacgagacctgctcagcaacgagaaggcagacgtttctgtgatcgaggcggtggcc
aacgaggtgttgtctcttgagatgccgacgtcgacagacaagctgcacgagctgacgaag
gagatcaaggagaaggtcggcactctgaccagcgtggagacgatcctcagccagagcgct
gacgacatccaagctgccgagtcgctgctcaaacaggccaaggccgccagtgaacaggcg
tccaacatgaaggagactgcagatgtggtgaaggcagccctggatgagactgagcgtgct
cagactatcgccatggacgccatccaactggcccagaacaacactaagggcaccctggac
ctgctgatctctgtggagtcggagacggccatgtcggagctgaagctcagtaacaccacg
ggtcgcctggtgcagctggagagggaagtcgggctgctgagacagaacaacctggaggtg
aaccacctggcagaggctgccgacctgagcaccgagcgggccaaagtgaacgcagaggag
gccgagcaggagtttaacgtggaggtgaaagataaatttgcggaggtggaggacctggtg
gagtttaaaggggagtcggtgctgcaggcgaggaggcgagcggacgagatgcagcaggag
gccaaagagctgctcgcccagagcagcagcaagctgcagaggctcggagagttggagagc
tcgtacgaggcaaaccagcaaatcctggaggccaaagctgcagagctcgctgagctggag
gagaaagtacgtcggatcctggaagagatcagccacaaagtgacgctgtacagcacctgt
ctgtga
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