Larimichthys crocea (large yellow croaker): 104930059
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Entry
104930059 CDS
T04659
Symbol
ddx41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
104930059 (ddx41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104930059 (ddx41)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104930059 (ddx41)
Spliceosome [BR:
lco03041
]
Complex C
Other components
Complex C specific factors
104930059 (ddx41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
zf-CCHC
Utp25_C
Cas3-like_C_2
Microp_apicomplexa_4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104930059
NCBI-ProteinID:
XP_027135155
LinkDB
All DBs
Position
I:38441383..38447920
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AA seq
614 aa
AA seq
DB search
MEAENRPKKRSHGEDERSGSEGSEADDYVPYVPVKIRKQQMLQKMLRLRGKAVDEEQKDS
GEEQRDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPDTRHERVRKKFHILVDGDGIPPPIKSFREMKF
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQEK
RLSFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRSALCIGGMSVKEQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDL
KALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggaaaatcgacccaaaaagcgatcccacggagaggatgagaggtccggctca
gaaggatcggaggctgatgattatgttccgtacgttcctgtcaaaataagaaaacaacaa
atgctacagaagatgttgcgtctgcgaggaaaggcagtggacgaggagcagaaggacagc
ggggaggagcagagggatgaggacgagggtcttggtccacgctccaatgtcagtctcctc
gaccagcatcagcacctcaaggaaaaagcagaagcacgtaaggagtcggccaaagagaag
cagctgaaagaggaagagaagatccttgagagtgtagcagagggcagagctctgatgtct
gtgaaggaaatggccaaaggtatcatctatgatgatcccataaaaacaagctggaaggca
ccgcgctacatcctgaatatgccagacacccgacatgagcgcgtcaggaagaagtttcac
atcctggtggacggagacggcatccctcctccaatcaaaagcttcagagagatgaagttt
cctccagcaattctaaaaggtttgaaaaagaagggcattgtgcatcccacacccattcag
attcagggaatccctactgttctgtcaggtcgggacatgattggaatcgccttcaccggt
tctggaaagactctggtcttcactctgcccatcatcatgttttccctggagcaggagaaa
aggctgtctttctttaagagagagggaccatatggactcatcatctgtccctcacgagag
ttggcgaggcagacccacggcatcatcgagtactactgcaagctgctggaggaggaggga
gctcctcagctgcgctctgcgctctgcatcggagggatgtctgtcaaggagcagatggag
gttgtaaaacatggcgtccacatgatggtcgctacacctggcagactgatggacctgctg
cagaagaagatggtgagtctggacatctgccgctacttggctctggatgaggctgatagg
atgattgacatgggctttgaggaagacatcagaaccatcttctcctatttcaagggacaa
agacaaactctgctcttcagtgccactatgccaaagaagatccagaactttgccaagagc
gcgctggtcaaacccatcactatcaacgtgggcagggccggtgctgctagtttggatgtc
atccaggaagtggaatatgtcaaagaggaagctaagatggtgtatttactcgagtgtctc
cagaaaacaccaccacctgtgttgatctttgctgagaagaaggcagatgtagatgccatc
catgagtatctcttgctaaaaggagtggaggccgtggccatccatggtggaaaagatcag
gaggaaagaacaaaagccatagaggcttttaaagaaggaaagaaagacgtcttagtcgcc
acagacgtcgcctccaagggtctggatttcccagctatacagcatgtggtgaattatgac
atgcccgaggagatagaaaactatgtccatagaattggaagaactggtcgttcaggcaag
actggtattgccacgacattcatcaataaaggctgtgatgagtcagtcctcatggacctt
aaagccctgctagttgaagccaagcagaaggttcccccagtcctccaggttctgcaaacg
ggagacgagaccatgctggacatcggaggagagaggggctgtacgttttgtggtggtctg
ggtcatcgtatcacggactgtcccaagctggaggccatgcagaccaagcaggtcaccaac
atcgggcggaaagattacctggctcatagttcaatggacttctaa
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