Larimichthys crocea (large yellow croaker): 104930344
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Entry
104930344 CDS
T04659
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03030
DNA replication
lco03410
Base excision repair
lco03420
Nucleotide excision repair
lco03430
Mismatch repair
lco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104930344 (pold1)
03410 Base excision repair
104930344 (pold1)
03420 Nucleotide excision repair
104930344 (pold1)
03430 Mismatch repair
104930344 (pold1)
03440 Homologous recombination
104930344 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lco03032
]
104930344 (pold1)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104930344 (pold1)
Enzymes [BR:
lco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104930344 (pold1)
DNA replication proteins [BR:
lco03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
104930344 (pold1)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
104930344 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
104930344 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
104930344
NCBI-ProteinID:
XP_010743412
LinkDB
All DBs
Position
XII:20423264..20432932
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFKRRNGGPLMGGASQAKRGKPAGEWEDSPSQFEEELSMFDDAEMDAEEMEGQAGHDVI
PVGDLFSADLNPRWRRPNAPTLDPSSDTLVFQQIDLDYYLGATVAGMPGQSQGKVPIIRM
FGVTDSGNSVCCHIHGFAPYFYVPAPSGFTSNYLGEFKKELNSAVLKDMRSNKDNISVTV
LAVDITRKENMYGYHGKRSLDFLRITMAMPRLIAPAKRLLEQGFKFGPFPIQSYQSYEAN
IDFEIRFMVDTDVVGCCWIELPKGKYRAREEKSIGDADSEYPGKASLCQYEVDVGWTDLI
SHPAEGDWQRIAPLRVLSFDIECAGRKGIFPEADKDPVIQIASMVQRQGETEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFLRTVDPDVITGYNIQNFDFPYLLNRAAALKVN
LFPYLGRVRGIKSVLRDLNFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKNSLSPEDFIKTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKAELKKETDPFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTISNGYQGDAKVIYGDTDSVMVKLGVATVREAMDIGK
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSTSADNHDKMDCKGIETVRRDN
CPLVANLINTCLQKILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENTIPIDTQY
YLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSKIGGLMAFAQKRSTCIGCK
AVLKTDAAVCDFCKKKESELYQKEIFHLNALEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaagacgcaatggtggccctcttatgggtggtgcgtcccaggccaaacgg
ggtaaaccggctggtgaatgggaggacagtccatcacagtttgaagaggagctgtccatg
tttgacgatgctgagatggatgcagaggaaatggaggggcaggcaggccatgatgttatt
cccgtaggtgacctcttctcagcagaccttaaccctcgttggcggcgtcctaatgccccc
acactggacccatcatctgacactttggtgtttcaacagattgatcttgactattattta
ggggcaacggtggccggcatgcctggccagtcacagggaaaagtcccgatcattcgaatg
tttggggtgacagacagtggcaacagtgtgtgctgccacattcatggttttgcaccttac
ttctatgttcctgcaccaagtgggttcacatctaattatctgggtgaatttaaaaaagag
ctgaactctgctgtcctgaaggacatgagatccaataaggacaatatctctgtcacagtg
ttggctgtggacatcacacgcaaagagaacatgtatggttaccatgggaaacgcagtctg
gattttttgcggattacaatggcaatgcctcgtctcattgctccagcaaagagactgctg
gagcaaggcttcaaatttggacctttccccatacagagttaccaatcctatgaggccaac
atagattttgaaataagatttatggtggacaccgatgtggtgggttgttgctggattgaa
cttcccaaaggcaagtacagagcacgtgaagagaagagcattggggatgcagattctgag
taccctgggaaggcgtccttgtgtcagtatgaagtggatgtgggatggacagatttgata
agtcaccctgcagagggagactggcagaggatcgcaccgctcagggtcctcagctttgat
attgagtgtgcaggaagaaaaggaatcttcccagaagcagacaaagaccctgtgattcag
atagcatctatggtccagcggcagggtgagacagagcccttcattcgcactgtgttcacc
ctccagtcctgcgccagcatcgtgggctctcagatattgtgctttacacaggagaaacag
ctactgcagagctgggcagagtttttgaggacagtggacccagacgtcatcactggatac
aacatccaaaactttgactttccctacttactcaacagagcagcagctttgaaggtaaat
ctgtttccctacctcggccgagtgcgaggcatcaagtcagtcttgcgagatctaaacttc
cagagcaagcagatgggccgcagagagaacaagaccattaacatggagggccgggttcag
tttgatctactgcaggttctcctcagggactataaactgcgctcatacacactgaacgct
gtgagtttccacttcctgcaagaacagaaggaggacgtgcagcactccatcatcactgat
ctgcagaacggcaacgaacagacacgtcgtcgtctggctgtctactgcctgaaagatgcc
tacctcccactgcgtctgctgcagaagctgatgtgtgtcattaactacatggaaatggcc
agagtgacaggtgtgcctctcacctacctgctatcaagaggacagcagatcaaagtcgtc
tctcagctgctgcgacaggccatgaaacaagacctggtcatgcctgttgtgaagacagaa
ggaggagaagactacacaggagcgactgtcattgagccagagaaagggtattacagtgtt
cctattgccaccctggatttctcctccttgtatccatctatcatgatggctcacaatctg
tgctacactaccctgctacagaaaggctcagcagaaaaaaacagcctctcaccagaggac
ttcatcaagactccgactggtgatttgtttgtgaagagctctgtgaggaaaggacttcta
cctgagatcctggagaatctgctgtccgccaggaagagggccaaagcagagctaaagaag
gaaactgaccctttcaagaggcaggtgctggatggtcgacagctggccctcaaaataagt
gcaaactctgtctatggcttcacgggtgcccaggtgggaaaacttccctgcctagagatc
tcacagagtgtcactggttttggaagacagatgattgagcaaaccaaacagttggtggag
tccaagtacaccatttccaatggttaccaaggtgatgccaaggtaatttacggagacaca
gactctgtcatggttaagcttggagttgcaacggtgagggaggctatggatattgggaag
gaggcagcagagtgggtatcatcccacttcacacctcccatcaagctggagtttgagaag
gtttactacccgtacctgctcatcaacaagaaacgctacgcaggcctctatttctccaca
agtgcagacaatcacgacaagatggactgtaaaggcattgagactgtccgcagagacaac
tgccctctagtggctaaccttatcaacacatgcctgcagaaaatcctcatagacagggat
ccccagggtgccgtggctcacgctaaagaagtgatctcagatctgctatgcaaccgcatc
gacatcagccagctggtcatcaccaaggagctaacgcgcactgcccaggagtatgctggc
aaacaggcacatgtggaactggctgagagaatgaggaaaagagatgctggcagcgctcca
aacctgggagaccgagttccatacgtcatcatcaaggctgcaaagggagcagcagcgtac
atgaagtcagaggacccaatctatgtgctggagaacactattcccattgacacacaatac
tacctggagcagcagctgtccaagcccctgctgagaatatttgagcccatcctgggagag
agcaaagcagagagtgtcctgctcaagggcgaccacacacgatgtaagactgtgttgacc
tcaaagatcgggggcctcatggcattcgctcagaagaggagcacctgtatcggctgcaaa
gctgtactcaagacggatgcggctgtgtgtgacttctgtaagaagaaggagtctgaactg
taccagaaagagatctttcacttgaacgctctggaggagcgtttctctcgcctgtggact
cagtgtcagcgctgtcaaggctccctccacgaggatgtgctctgcaccagccgggactgt
cccatcttttacatgaggaaaaaggttcagaaagatttggatgaccagagcaagctcgtg
tcacgctttggatggtga
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integrated database retrieval system
