Larimichthys crocea (large yellow croaker): 104930557
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Entry
104930557 CDS
T04659
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco00100
Steroid biosynthesis
lco01100
Metabolic pathways
Module
lco_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
104930557 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lco01006
]
104930557 (fdft1)
Enzymes [BR:
lco01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
104930557 (fdft1)
Prenyltransferases [BR:
lco01006
]
Terpene biosynthesis
Squalene/phytoene synthase
104930557 (fdft1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
TM1266-like
GBP_C
Motif
Other DBs
NCBI-GeneID:
104930557
NCBI-ProteinID:
XP_019126144
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Position
XI:complement(10886859..10894677)
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AA seq
457 aa
AA seq
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MAGACCKCPVSLSVFKRSLSVAPRGCGSAPRSLLLGWRLGERGLQEAARPSSALRPAGFY
RHTTFLCLSCQESMSESLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMTIPLDKKVPMLNDFHTFLYQDEWCFTESREKDRQVLEDFPTISVEFRNLAQEYRDV
ISDICHRMGVGMAEFLEKKVGSMKEWDLYCHYVAGLVGIGLSQLFSASKLEDPEVGRDTD
LANSMGLFLQKTNIIRDYLEDTQEGRAFWPQEAWSQFAGRLEDLAQPEKLESALSCLNLL
VTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSKCYNNPMVFQGVVKIRKGQAV
TLMMEATNMRAVQTIITQYSQEILQKVSLTDPSRDKTLHILTVIQEKSALSQSSLPSRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccagtctctctgtccgtgttcaagcgctctctctcc
gtggcaccgcggggctgcgggtccgcacctcgatccctccttctgggctggaggctgggg
gagcgaggccttcaagaggccgcccgaccctccagcgccctcagacccgcaggcttttac
cgacacactacctttctctgcctgtcctgccaggagtccatgagtgagagtctgcggacc
tgctacctgtacctgaaccaaaccagccggagttttgcagctgtgattcaagcgctggac
ggagagttaagacatgcagtttgcattttctacctggtgctgcgagcgctggacacagtg
gaggatgacatgactatccctctggacaagaaggtccccatgctgaacgattttcacacc
ttcctgtaccaagatgagtggtgcttcactgagagccgagagaaagaccgacaggtcctg
gaggatttccccacgatatcagtggaattcagaaacctcgctcaggagtacagagacgtc
atctcagacatctgccatcgtatgggagtgggaatggccgaattcttggaaaagaaagta
ggatccatgaaggagtgggacttgtattgccactacgtagcagggctggtcggtatcggc
ctgtctcagctgttctctgcgtccaagctggaggaccctgaggtggggagggacaccgac
ctagctaactccatgggcctgttccttcagaagactaacatcatccgagactatctagag
gacacgcaagagggacgtgctttctggccacaggaggcttggagtcagtttgcgggtcgt
ctggaggacttggcccagcccgagaagcttgagtcggctctctcctgtctcaacctgttg
gtcactgatgctctgcggcacgtcccggatgttattgcttacctgtcccgcctgcgcaac
cagagcgtcttcaatttctgcgccattccacaggtgatggcaatagctacactatcaaaa
tgctacaacaaccccatggtgttccagggagtagtgaagatcagaaagggacaggctgtc
acactcatgatggaagccaccaacatgagagccgtgcagaccatcatcacccagtacagc
caagagatcttacagaaggtctccctcactgacccgtcacgggacaaaaccctgcacatc
ctgactgtaatccaagagaagtccgccctgtcgcagtccagcctcccctccaggacccac
cacctgtcgcccatgtacctgtctgctgctatgctgctcgctgccctcagctggcagtac
cttagcaccactgcagcacaggcacaaggcaccggcgacatgcagggacagtaa
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