Larimichthys crocea (large yellow croaker): 104930747
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Entry
104930747 CDS
T04659
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104930747
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104930747
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104930747
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104930747
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104930747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
104930747
NCBI-ProteinID:
XP_027139887
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Position
I:8406678..8497114
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AA seq
1124 aa
AA seq
DB search
MAALRWEVLVFVAVVLLVSCGAAPSDILYRVPEEQPPNTLIGSLAADRGLPDTGHLYKLE
VGSPYLRVDGKTGDIYTTEIPIDRETMRDCRNPFDEKCFLEFEVSITDMVKGIGSGPRLI
EGRIEVLDINDNTPQFSSPILTLSIPENTHIGALFSIPMATDRDSGTNGVAEYSLSTGPD
ADQLFSLQVAVDTDEKLPQLVVMGNLDREKKDSYDLNIRVVDGGKPPRASSALLRVTVTD
QNDNAPKFERNHYEAELPESSPQGHSVLQVRANDADTGTNGEIDYSLHQASETVQRLLRI
DRSTGIIYVKNTVDREEDNFLKFFVVAKDRGPNTKSSKVLVTINIKDQNDNAPAIEIRGI
GLVTHQDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRLASESSNDS
KKKYFLRTTTLLDYEHLREYFVEIVAVDSGNPALSSTNSLKVQVTDVNDNTPIFSPTVFE
VDFAEGNQPGDKVLDVVATDADSGTNAELVYSIIENSATRLFEIDANTGVVRVKNLLDRE
ETERYEFRVAAADKGVPIKTGTATVVINVLDRNDNDPKFMLSGYSFSVNENMAPLNPVGV
VTVTDSDEGENARVRLYVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLKAVDAGDP
PRSSYVGVTINVLDENDNAPYVTKPANSSYTYLSPVTPPNTRVEMVEAEDIDSGPNAELD
YKITGGNPYGLFHILPSTGEITLAQEFTSKHNGLHRLVVKVSDKGKPPRHTIALVHVFVN
DTKSNVSLIEALVGHSLYTPLERDIAGDPNYALAHQSNILYGSLAGIAGVILVIVAVMVI
RHRLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKSKKGKAPKPAKPLEEDEEASLQKG
LKFNLINDNVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQD
LPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQLPHRRVTFSTANQSQDLQDASQH
SYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENGKTRWSFPPS
TPLFTSSSSIHHTHTHTCTKSNKHCWLSHTLNTLCGNVMCQQEC
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctaaggtgggaggttctagtgttcgtggcggtcgtcctgctggtctcctgc
ggcgccgcgccctctgacatcctgtatcgggttcccgaggagcagccgcctaacacgttg
atcggtagcctggcggcggaccggggccttcccgacacgggccatctctacaagctggag
gtgggctcgccgtacctgcgggtggacggcaagaccggcgacatctacaccaccgagatc
cccatcgaccgcgagaccatgagggactgccgcaacccgtttgacgagaaatgcttcctg
gagttcgaggtgtccatcaccgacatggtgaaaggtatcggctcggggccgcggctgatc
gaagggcgcatcgaggtgctggacatcaacgacaacacgccacagttctcctcgccaatc
ctcaccttatccatccccgagaacacacacatcggcgccctcttctccatccccatggcc
accgacagggactccggcaccaacggcgtggccgagtactcgctgagcaccgggccggac
gccgaccagctgttcagccttcaggtcgccgtagacacggacgagaagctgcctcagctg
gtcgtcatgggcaacctggaccgcgagaagaaggactcgtacgacctgaacatccgggtg
gtggacggtgggaagccgccgagggcgagcagcgctctgctgcgggtcaccgtcaccgac
cagaacgacaacgccccgaagtttgagaggaatcactacgaagccgaactgccggagagc
agcccgcagggtcactcagtgctgcaggtcagagccaacgatgcagacaccggcaccaat
ggagagattgactacagcctccatcaggcgtcagagaccgtccagagacttctgcgcatc
gaccgctctacaggcatcatctacgtcaaaaacacggtggaccgtgaggaggacaacttc
ctcaagttctttgtggtcgccaaagatcgcggaccaaacaccaaaagctccaaggtgctg
gtgaccatcaatatcaaggaccagaacgacaatgccccagccatcgagatccgtggtatc
ggcttggtgacacaccaggacggtgtggccaacatctctgaggacatgcccatcggcaca
ccggtggcgttggtccaggtgtcggaccgtgatgagggggaaaatgcagtggtcacgtgc
gtggttgccggtgacgtcccatttcagctccgacttgcgagcgagtcatccaatgatagt
aagaagaaatacttcctgcggacgactactctgctggattacgagcatcttcgggaatac
tttgttgaaatcgttgcagtggattctgggaacccagccctgtccagcaccaactctctt
aaagtccaggttacagatgtgaacgacaacacgccaattttttcccccacagtattcgag
gtggactttgcagagggtaaccaaccgggtgacaaggtgctggatgtcgtggcaaccgat
gccgatagcggcaccaacgcagagctggtttacagcatcatcgagaactccgccaccagg
ctctttgaaattgacgccaacactggagtggttcgtgtgaagaacctgctggatcgggaa
gagacggagcggtacgaattccgtgtggcagcggcagacaagggcgtccccatcaaaacc
ggcactgctacggtggtgattaatgttctggaccgcaatgacaatgaccccaagtttatg
ctgagtggctacagcttctctgtcaatgagaacatggctcctctcaaccctgttggtgtt
gtgaccgtcactgatagcgatgagggagagaacgccagagtgaggttgtatgtagaacca
gacaatggaaagtttgtcatccagaatggtacaggaaccatcctgtcgagcatctccttt
gaccgtgagaaggagagcacctacaccttccggcttaaggctgtggatgccggcgaccca
cctcgatcctcctatgttggtgtcaccatcaacgtcctggatgagaatgataacgccccc
tatgtcaccaaaccggcaaactcctcctacacatacctgtcccctgtcacaccgccaaac
acccgtgtggagatggtagaggctgaggacattgactctggacccaacgctgaactggac
tacaaaatcacaggtgggaacccatatggcttgttccacatcttgccaagcaccggggag
atcacgttggcacaggaattcaccagcaagcacaacgggctgcaccgcctggtggttaag
gtcagtgataaaggcaaacctcctcgtcacacgatcgccctggtccatgttttcgtcaat
gacaccaagtcaaatgtatccctcattgaggcgctggttggacacagcctctacacccct
ctagaacgggacattgctggagatcccaactacgccctcgctcaccaaagcaacatcctg
tacggcagccttgctggtatcgccggcgtgattcttgtcattgtagccgtcatggtcatc
agacaccgactacagaaggacaccaagagtggctaccaggctggcaagaaggaaagtaag
gacctctacgcccccaagcaaggccccaaaaatggtaaagggaagaagagtaaaaagggt
aaagctcctaaaccggccaaaccgctggaggaggacgaggaggcgagcctacaaaaaggc
ctcaagttcaatctcatcaacgacaacgtcaacgacagtcccagaatccacttgcccctt
aactacccaccaggaagccccgacttgggccgccactaccgctcaaactcccccttaccc
tccatccagcttcaaccgcaatccccttctgcatccaagaagcaccaggccgttcaggac
ctccccgccaccaacacctttgtgggaacgggcgacaacaactcgacgggctccgaccaa
tattcggattacagctacaaggccaacccgcccaaatacagcagcaaacagctcccccac
cgccgagtgaccttctccacggccaatcagtcgcaggacctgcaggacgcgtcccagcac
agctactacgacagcggcctggaggagtcggagacgcccagctccaagtcgtcgtcgggg
cctcggatcggcccgctggcgctgccggaggaccactatgagcggaccacgcccgacggc
agcatcggcgagatggagcacccggagaacggtaagaccaggtggagtttccctccctct
actcctcttttcacctcctcctcctccatccatcacacacacacacacacatgcacaaaa
agcaataaacactgctggctgtcacacacattaaacacactgtgtggaaatgtgatgtgt
cagcaggaatgttag
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