Larimichthys crocea (large yellow croaker): 104930813
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Entry
104930813 CDS
T04659
Name
(RefSeq) splicing factor, proline- and glutamine-rich isoform X1
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lco01009
]
104930813
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104930813
03041 Spliceosome [BR:
lco03041
]
104930813
Protein phosphatases and associated proteins [BR:
lco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104930813
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104930813
Spliceosome [BR:
lco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104930813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_7
Motif
Other DBs
NCBI-GeneID:
104930813
NCBI-ProteinID:
XP_010743996
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All DBs
Position
XIII:9514496..9531350
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AA seq
649 aa
AA seq
DB search
MSRFNNNRGGLGMNNFQPRRGGGPGGPMRGGLMGNPHFRNHPFQNQNQNRRGGNNNFNRP
PNQGPQVTPQKQQPNQSLPIIPPPSPGPALTMKGPMQQQQKPAQPQQQPQQEEQRKPATP
APQPKVQTPPPKPNITSPPPSQANKNQNQNQNQQLKSPANGQQKPPPHPSPKTGPQQGQK
MGPQQGQKSGPQQSHQRTGPQQGQRPGPPATKPKQDREEPGRGATNEADGSQQKEFKATL
SMLLKPGEKTYTQRCRLFIGNLPNDITEEDFKKLFAKYGEPSEVFINKSKGFGFIRLESR
ALAEIAKAELDDTPMKGRPLRVRFATHSAALSIKNLSPFVSNELLEEAFSQFGMVERAIV
IVDDRGRSTGKGIVEFASKPAARKALDRCNEGVFLLTTSPRPVVVEPLEQFDDEDGLPEK
LAQKNPRYQAEREEPPRFARPGTFEFEYSKRWKSLDEMEKQQRQQVEKNMREAREKLESE
MEDAYHEHQANLLRQDLLRRQEELRRMEELHSQEMQKRKEMQIRQEEERRRREEEMLRKR
EMEEQMRRQREENYRMGNFMDRDREMRMNPGGALGMGDMPFGASNQKFPMGGLGFEGQQG
MGSSPGGLMGNEMRNERFAQGGPRGMGPGNPGYGRVREEFDGPTKKPRF
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgatttaacaataatcgcggcggcctcgggatgaataacttccagccacgcaga
ggcggtggacccggcggcccgatgcggggagggctaatgggaaacccgcattttaggaac
catcctttccagaatcagaaccaaaaccggaggggagggaataataacttcaacaggccg
cctaatcaaggaccacaggtgactccccagaagcagcaaccgaaccagtcgttgcccatc
atccctccaccgagccccggcccggcgctcaccatgaaaggccccatgcagcagcagcag
aagccggcacagccgcagcagcagccgcagcaggaggagcagcggaaaccggcgacccct
gcgcctcaacccaaggtccaaacccctccaccgaaaccgaacatcacatcccctccaccc
agccaggcgaacaagaaccagaaccagaaccagaaccagcagctgaaatccccggctaac
ggacagcagaagccgcctccacacccaagcccgaagacaggcccacagcaaggccagaag
atgggcccacaacaaggccagaagtccgggcctcagcagagccaccagaggacgggccct
caacagggacagagaccggggccaccggcgacgaagcccaaacaggatcgagaggagccg
gggagaggagcgacaaacgaggccgacggcagccagcagaaggagttcaaggcaacactg
tccatgctgctgaaacccggtgagaagacctacacgcagcggtgtcgcctgttcatcgga
aatctgcccaacgacatcacagaggaagatttcaagaagctgttcgcgaaatacggagag
cccagcgaggtcttcatcaacaagagcaaaggctttggtttcatacgattggagtctcgg
gcacttgcagaaatagccaaagcagagttggacgacacgccaatgaaaggcagacccctt
cgcgtccgctttgccacacactctgcagcgctatccataaagaatctgtctccgtttgtg
tccaacgagctcctggaagaagccttttcacagtttggcatggtcgagagggccatcgtc
attgtagatgaccgcggccgctccacaggcaagggcatcgttgagtttgcctccaaaccc
gcagccagaaaggccctggatcggtgcaacgaaggcgtcttccttctcaccacgtcaccc
cgtcctgttgttgtcgaacctctggagcagtttgatgatgaagatggtcttccagagaaa
ctggcacagaagaaccccagataccaggcagagcgagaggaaccaccccgttttgctcgt
ccaggcacttttgagttcgagtactccaaacgatggaagtccctggatgaaatggagaag
cagcagaggcagcaggtggagaagaacatgcgcgaggcccgcgagaagctggagagcgag
atggaggacgcttaccacgagcaccaggccaacctgctccgacaagatctgctcaggcgg
caggaggagctgaggcgcatggaggagttgcacagtcaagagatgcagaagaggaaggag
atgcagatcagacaagaagaagagcgtcgccggcgggaggaggagatgcttcgcaagagg
gagatggaagaacagatgcgccgccagcgtgaggagaactacaggatgggcaacttcatg
gatagggacagggaaatgagaatgaatcctggtggagctttgggcatgggtgatatgccc
tttggtgcatccaaccagaagttcccgatgggtggacttggctttgaaggacagcaggga
atgggatcatctccaggtggcttgatgggcaacgaaatgcgcaatgagcgctttgcccag
ggcggtcctaggggaatgggtcctggtaaccccgggtatggcagggtacgcgaggagttt
gatggtcctactaagaaaccccgtttttaa
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