Larimichthys crocea (large yellow croaker): 104930840
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Entry
104930840 CDS
T04659
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104930840 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104930840 (cpsf2)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104930840 (cpsf2)
U7-dependent histone pre-mRNA processing factors
104930840 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
104930840
NCBI-ProteinID:
XP_027140002
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Position
XI:complement(4901088..4910450)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLVDLARVPSPKVVLCSQPDLESGFSRELFIQWCQDGKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEDFLEKDKMKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKAEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKNKLDAGLTNGDEPMDQDLSVVPTKCISSIENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEAEDGE
LAMDVAPDLGMDNNATAVAAQRAIKNLFGEDEKEVSEESDVIPTLEPLPSHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacctccatcatcaagctgacagccgtgtcaggggtccaggaggagtcggccctctgt
tacctgctgcaggtggatgaattccgcttcctcctggactgtggctgggatgagaacttc
tccatggacatcatcgatgccatgaaaagatatgttcatcaggtcgatgctgtcctcctc
tcccaccctgaccccatacacctgggagccctgccgtacgctgtggggaaactgggtcta
aactgcactatctatgctacgattcccgtctacaagatgggtcagatgttcatgtatgat
ctgtatcagtcccggaacaacagcgaagatttcacgctgttcaccctcgacgacgtggac
tgtgcgtttgataaaatccagcagctgaaatactctcagattgtcaatcttaaagggaaa
gggcacggtctttccatcactcctcttccggccggtcacatgatcggaggcacaatttgg
aaaattgtgaaggacggggaggaggagatcgtttatgctgtggactttaaccacaagaga
gagattcacctcaatggctgcacgttggagagcatcagtcgtccttccttacttatcaca
gactccttcaatgctacatatgtacagccacgtcgcaaacaaagagatgagatgctcctc
accaatgtaatggagacccttcgtggcgacggtaacgtcctgattgccgtggacacagct
ggacgcgtgttagagctggcgcagctcctggaccagatttggaggacaaaggatgccggg
ctgggagtttacccgctagctctgcttaataatgtcagctacaatgtggtggagttctcc
aagtcccaggtggagtggatgagcgataagctcatgaggtgttttgaagacaagagaaac
aaccccttccagttccgtcacttgaccctctgccacagtctggtggacctggcccgggtg
cccagtcccaaggtggtgctgtgcagccagccggacctcgagtctggcttttccagagaa
ctcttcatccagtggtgccaagacggcaaaaactccgtcatcttgacctaccgcaccaca
cctggaaccctggcccgctacctcatcgacaaccccggagagaagatgctggacctggag
gtgaggaaaagggtgaagctcgaaggcaaggagctggaagacttcctcgaaaaggataaa
atgaagaaagaagccgcaaaaaaacttgaacaagcaaaagaggtggatgtagactccagc
gacgagagcgacatggacgacgatctggatcagccggccgcagtgaaaaccaaacaccac
gacctgatgatgaaggccgaggggagccgcaagggcagtttcttcaaacaagccaaaaag
tcgtatccaatgttccccacacacgaagagaggatcaaatgggacgagtacggggaaatc
atcaggctagaagagtttctggttcctgaacttcaagccacagaggaggagaaaaacaaa
ttggatgccgggctgaccaacggtgatgagcccatggatcaggatctctctgttgttccc
accaaatgcatctccagcatagaaaatcttgaaattagggcgagggtaacctatatagat
tacgaagggcgttccgatggcgactccatcaagaagattatcaatcagatgaagcccagg
cagctggtgatcgttcacgggccgccagaagccagccttgacctggccgagtcctgcaag
gctttcagcaaggacatcaaagtctacacccccaaactgcaggagaccatagacgccacc
agtgaaacacacatctatcaggtgcggttgaaagactccctggtgagctccctgcagttc
tgcaaggccaaagacaccgagctggcgtggatcgacggcgtgctggacatgcgcgtggtg
aaggtggacacgggcgtgatgctggaggagggagtgaaagacgaggccgaggacggcgag
ctggccatggacgtcgcccccgatctcggcatggacaacaacgccacggcggtggcggcc
cagcgcgccataaagaacctgtttggggaggacgagaaggaggtgtccgaagagagcgat
gtcattcccacgctggagccgctgccttcacacgagattccagggcatcagtcggtgttc
atcaacgagcctcgcctgtctgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtgggaggagtgctggtgtgcaacaacatggtggccgtccgcaggacggaggcc
ggacgcatcggcctggaaggctgcctgtgtgacgactactataagatccgggagctgctg
tatcagcagtatgccgtggtatag
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