Larimichthys crocea (large yellow croaker): 104930937
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Entry
104930937 CDS
T04659
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104930937
04518 Integrin signaling
104930937
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104930937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104930937
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104930937
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_2nd
DUF7949
Fn3_VIN3
Pur_ac_phosph_N
EGF
EGF_PEAR1L
NDNF
FN3_Tor_3rd
hEGF
DUF4998
SPE9_EGF_3rd
NDNF_C
Motif
Other DBs
NCBI-GeneID:
104930937
NCBI-ProteinID:
XP_027138028
LinkDB
All DBs
Position
IX:1442728..1505419
Genome browser
AA seq
2463 aa
AA seq
DB search
MWRCSWILTVRVFLALCGQLTRLNFICGRGSRAEVDKTSRTELDLSLSCERECLKSRRLY
LHEKIPLNRTFIINQDRPSVKGSNILFISSPRPTSSMGTRGLLGCLLLTALLSLSNAGLV
KKILRHRRQIPSTPEEHNITLPSEGQPVVFNHVYNINVPASGLCSVNLDAAESTELQPKD
AAVSAGHRASEHTVNGENQIVFTHRINIPRQACGCTEDLPGLKALMSRLEMLEGEVSALR
NQCNGHRSQVTGEVGTKPYCNGHGNYSAETCGCVCEPGWKGPNCSEPACPKNCHDRGRCV
DGKCECSKGFTGDDCALEDCPVDCGVHGQCVAGVCVCSDGFFGDDCSETTCLNNCRGRGR
CDDGYCVCDEPWTGLDCDEIICPKDCYDRGRCENGTCFCDEGFTGDDCGDRTCPNNCHGK
GFCVDGKCACIAGFSGEDCSQLTCLNDCNGRGSCFNGMCICETGYQGEDCSQLACLNNCN
NRGQCINGQCACDVGFQGDDCAELSCPNDCLHRGRCVNGQCVCEEGFAGEDCRIRTCPSN
CYGRGECIEGRCVCHAGFTGEDCSELSCPNNCQNQGRCVDGQCVCDEGFAGEDCGRKACP
NDCLTRGHCVDGKCVCQEGYSGDDCSVVACPNNCNNRGRCINGRCSCQSGYEGESCAELS
CLNDCHDKGRCVDGRCVCDEGYIGEDCSEVSPPKDLTVGEVTSDKVDLSWKNEMLVTEYL
ITYVPTIPGGLLQEFTVTGDKTLATVKELEPGMEYLINVYAVLSNKRSVPVSARVATDLP
QPEGLIFKSVRETSVEVMWDQLDITFDGWEIYFRNTKEENGKVMSTLPSSQNQFLQSGLG
PGQEYEVSINIIKNNTRGPQTSKKVTTKIDGPRQVEVKDVTASSALIGWSQPVAPMDKVT
MSYGPASDPSNQTSVDVFPPDKQYSVGGLKPDTEYKVSLISKSGDATSDPVTTTFTTALD
APTDLQAMSQTDDSITLEWTNSQADVESYLVKYSPISGATHGEELVPRGPGVSTTATITG
LKPGTEYGIGVTAVKNERESLPATTNAATDIDPPRDLKEVDSSETSLTLRWEKPQAKVGA
YRLTYYSKDGRYEEVVIPETATTHVLSNLSPGMSYMITLTAERGHKRSAHVALSASTASF
TFYLADTDDRDLTTPAGSEDNVISFVHLEPHSGSQPSGGTEPEDELGSLTVSGVTPDGFD
LSWRLKAHSVYDSLAVEYKDAQRSGDASEVRLPGDATGSRVEGLKASTEYQIILYGVTSS
QRSALLEAVAVTAPTPTSPDVLTLSIKAAPTTPHSALDIEAAQTPDPLRPLNTEAPSSSD
TGPMSSGAEPESSSLDELGDLTVNFTSTNVSLFLVEVSTPSGESQPHVTTPPGSVREETE
GLSPSTQYNVTLHGLVEGNRSLPLKVFPTAEELKPMVMNLTTSDITWDGFTASWSPSGGE
FDSFVIEVTNLENFAESQNLTLSGGALSLVISGLNPNTSYMVGLFGMYQGSFLEPVYTEA
TTVNQPVVGKLYISNLTPESFSIFWNGTEGEFDGFILEIIDSDWLMEPKEYNISRNVKSH
HITGLRPSTDYVAYLYGTYKGSRTSAVSIVASTAEEPDLSRLVVSNITSDRFSLSWRTGE
RSFDNFIVEVRESALPSQAMGRALPGDVRSTVMAGLKASTRYNIKLYASAGGQNTQPLFD
VATTEDVPQLGPITASSVSPHNLSLSWSTVSGHFDGFVIRVSDPEQQSDTLEFRLPGEAR
NITISNLMDATGYDIELYGISHGRHTPSLLAHAVTASLPKVENLTISNITPYGFRVSWEV
KQQLQQQEELAPSSGGFSQFHIVVTDSGWLLEPQEFTVPGNQSHLDIWGLITGIGYEVRL
TGVSESGLLSRPLTTVAVTEAEPEVEHLFLSDITADGFRLSWTSDEDMFDRFVIKIRDSK
RLAHPHEFSVRGDERTKVLTGLMSGTEYEIELYGVTLDQRSQPITGVVQTGLSTPRGLHF
SEVTDSSAVVHWSMPRSPVDHYRITYVPFEGGNPLMVTVDGSVFEALLPSMVPGKTYQVT
VSSVKGLEESDPSTDTVTTALDRPQGLTAVNVTDASALLLWQPSVATVDRYVITYSADSA
SPMVEHVSGNIVEFEMGSLVPGTHYTVGVHAVKETQKSDSAVTEFTTDVDPPRDLAAINI
QTDSATLTWRPPQAAITGYTLTFSSADGIIREVMLSSTASSYNMAQLTGSTEYSVKLQAI
AGAQRSRPVNTVFTTIGQLYKRPKDCAQILLNGETTSGLYTIYVGGEESQPLQVYCDMTT
DGGGWMVFLRRQNGKLEFYRNWKNYTAGFGNMNDEFWLGLSNLHKITNSGHYELRVDLRD
NTESAYAQYDKFTIAEPRSRYKVYVGAYSGTAGDSMIYHQGRPFSTYDNDNDIAVTNCAL
SYKGAFWYKNCHRVNLMGKYGDSSHSKGINWFHWRGHEHSIGFAEMKIRPANFRNFESRK
KRS
NT seq
7392 nt
NT seq
+upstream
nt +downstream
nt
atgtggagatgctcttggattttaaccgtgcgtgtgtttttggctttgtgcggtcagctt
acacgacttaatttcatctgcggcagaggaagcagagctgaagtggacaaaacttctcgt
actgagctggacctcagcctgagctgtgaacgtgaatgtttgaagagtcggaggctttac
ctgcacgagaagattccactcaacagaaccttcatcattaatcaggatcggccttcagtc
aaaggttcaaacattttatttatttcaagtcctcgtcccacgtcgagcatgggcacacga
ggccttctgggctgcctcctcctgactgctttgctcagcttatcaaacgccgggctcgtg
aagaaaatcctacggcaccgacgacagattccgtcgacccccgaagaacataacatcacc
ctgcccagtgagggacaaccggtggttttcaaccacgtctataacatcaatgttcccgcc
agcggcctctgctcggtgaacctggacgccgcagagagcacggagctgcagcccaaagac
gctgccgtctccgcgggccatcgcgccagcgagcacaccgtcaacggagagaaccagatc
gtcttcacacaccgcatcaacataccacggcaggcgtgtggctgcaccgaagacctgcct
ggcctgaaggccctcatgagccggctggagatgctcgagggagaagtttcagctttgaga
aatcagtgcaacggtcacaggtcacaggtcacaggtgaggtgggaactaaaccttactgc
aacggtcacggaaactacagcgctgaaacgtgcggctgtgtgtgtgagcccggctggaaa
ggtcccaactgctctgaaccggcgtgtcccaagaactgtcacgaccgaggccgctgcgtc
gacggaaagtgtgagtgctctaaaggtttcaccggagacgactgcgcgctggaggactgc
cccgtggactgtggggttcacggtcagtgtgtggccggcgtctgcgtctgctccgatggt
ttcttcggcgatgactgctctgaaaccacatgcctcaacaactgcagaggccgcggccgc
tgtgacgacgggtactgcgtgtgcgatgaaccctggaccggtttagactgcgatgaaatc
atctgccccaaagactgctacgaccgcggacgctgcgagaatgggacctgcttctgcgac
gaagggttcaccggggacgactgtggagatcgcacctgtcccaacaactgtcacgggaag
ggtttctgcgtggatggaaagtgcgcctgcatcgctggcttcagcggagaagactgctcc
cagctcacctgcctcaacgactgtaacggcagaggctcgtgcttcaacgggatgtgtatc
tgtgagacggggtaccaaggcgaggactgcagccagttggcgtgcctgaacaactgcaac
aacagaggccagtgcatcaacggacagtgcgcctgcgatgtcggcttccagggagacgac
tgcgcggagctttcctgtccgaacgattgcctccataggggacgctgcgttaacgggcaa
tgtgtgtgcgaggaaggcttcgccggcgaggactgccgcatcaggacctgtccctcaaac
tgctacggccgtggcgagtgcattgaaggacgttgcgtgtgtcacgcgggcttcaccggc
gaggactgcagcgagctgagctgccccaacaactgccaaaaccagggccggtgcgtggac
gggcagtgcgtctgcgacgaaggcttcgccggcgaagactgcggtcggaaagcttgtccc
aatgactgcctcactcggggtcactgcgtcgacggcaagtgcgtctgtcaggagggctac
tctggagacgactgctctgtggtcgcctgtccaaacaactgcaacaacaggggccgctgc
atcaatgggaggtgctcgtgtcagagcgggtacgaaggggaaagctgcgcagagctgagc
tgtctcaacgactgccacgacaaaggacgctgcgtggacggccggtgcgtctgcgatgag
gggtacatcggagaggactgctcagaagtgtctcctccaaaggatctcacggttggcgag
gtcaccagtgacaaagtggacctgtcctggaaaaacgagatgttggtaacggagtacctc
atcacgtacgtgcccaccattcccggtggacttcttcaggagttcaccgtgacgggagac
aaaacgcttgccaccgtcaaggagcttgaacctggcatggagtacctgatcaatgtgtac
gctgtgctgagcaacaagaggagtgttcctgtcagcgcgagggtggccacagatcttcca
caaccagaaggtttaatattcaaatcggtgagagagacctcggtggaggtgatgtgggac
cagctggatatcacctttgacggctgggagatctatttccgcaacacgaaagaagaaaat
ggaaaagtcatgagcaccctgccatccagtcaaaaccagtttctccagtcgggccttgga
ccaggacaagagtatgaagtctccatcaacattatcaaaaacaacaccagaggaccccaa
acatccaagaaagtcactaccaagatcgacggcccccgccaggtggaggtgaaggatgtg
acggcctcctccgctctgattggctggtctcagccggtggctcctatggacaaagtcacc
atgtcttacgggcccgcgtccgacccgtcaaaccaaaccagcgtggacgttttcccccca
gacaagcagtacagcgttggcggcctgaagccggacacagagtacaaagtgtcgctcatc
tccaagagtggagacgccaccagtgaccccgtcaccaccacattcactacagccctggat
gcccccacggacctgcaggccatgtcccagaccgacgacagcatcactctggagtggacc
aacagtcaagctgatgtcgagagctacctggtgaagtacagtcccatctctggagcgact
cacggtgaagaactggtcccgagaggaccaggagtctccacaacggctactatcaccggg
ctgaagccggggacggagtacgggatcggcgtgacggccgtgaagaatgagagagagagt
ctgcctgctactacaaatgcagccaccgatatcgacccaccgagagacctcaaagaggtc
gactcctcggagacctccctcaccttgaggtgggagaagccccaggctaaggtcggcgcc
tacaggctgacgtactactccaaagacggccggtacgaggaggtggtgatcccggagacg
gcgactactcatgtcctgtccaacctgagtcctgggatgagctacatgatcactctgact
gcagagaggggtcacaagaggagcgcacatgtcgccctttctgcttccacagcctctttc
acgttttatttagctgacacagacgaccgcgatctaacgactcccgcaggctcggaggac
aatgtcattagctttgtgcatttagagccccactctgggtcccagccctctggtgggacg
gagcctgaggatgagcttggatcgctgactgtctcgggcgtcacgcccgatggatttgac
ctctcgtggagactaaaggctcacagtgtctatgatagtttagccgtagaatataaagac
gctcagcggtcgggggatgcgagtgaggtccgacttcctggagatgccactggctccaga
gtcgaaggcctgaaggcatcgactgagtatcagataatactttacggagtaacgagtagc
cagagatctgcgctacttgaagctgttgcagtcacagcaccaacgcctacctctccagat
gtgcttacgctgagcatcaaagctgccccaacaaccccacactctgctctggatattgaa
gcagcacaaaccccagatcccctccgtcctctaaacactgaggcgccttccagctctgac
actggcccgatgagctctggcgctgagcccgaaagctcgagtctggatgaattgggcgac
ctcacggtcaattttacctccactaatgtaagcctgtttttggtggaggtcagtactccg
tcaggggagtcacagcctcacgtgaccacaccgccaggaagtgtgagggaggaaacggag
ggtttgtccccctcgacacaatataatgttacgttacatgggctggtggaagggaaccga
tctttacctctcaaagtttttcctactgcagaggagctgaagcccatggtgatgaacctc
accacctctgacattacatgggatggcttcactgcgtcctggagcccctcgggtggggaa
tttgacagctttgtcattgaggtaacaaacttggagaatttcgcagagagccagaacctc
actctgtcgggaggcgctctcagcctggtcatctccgggctgaatcccaacaccagctac
atggtgggcctgtttgggatgtatcagggctccttccttgaacccgtgtacactgaagcc
accacagtgaatcaaccagtggttggcaaactatatatctcaaacttaacgccagagagc
ttttcaatcttctggaacggcactgaaggagaatttgatggttttatcctggagataatt
gattctgattggctgatggagccaaaggaatataacatatcccgcaatgtaaagtcccat
cacatcacagggctcaggcccagcactgactatgtagcctacctctatgggacatacaag
ggatccagaacaagtgctgtcagtattgttgcatcaacagctgaagagcctgatttgtcc
aggctagttgtttctaacattacctcagacagattctctctgtcgtggcggacaggagag
aggtcttttgataactttatagtagaagtcagagagtctgctttgccctcgcaggcaatg
gggcgcgctctgccaggagacgtgcgctccacagtcatggccgggctcaaagcgagcaca
aggtacaacataaagctgtacgccagcgctggtggccagaacacacagcccctgtttgat
gtagctacaacagaggatgtcccacagttggggcccataaccgcttcatctgtgagccca
cataacctcagcttgtcctggagcacagtgtcgggccactttgatggctttgttatccgg
gtcagtgaccctgagcagcagtctgacacgctggagttcagactgcccggtgaagcccgt
aacattacgatctctaacctgatggatgcgacaggctatgatattgaactgtacggtatc
tctcacgggcgccacacaccctctctgttagcccacgctgtcacagcttctttgcccaaa
gtggaaaacttgaccatttccaacataaccccctacggcttccgtgtgtcgtgggaggtg
aagcagcagctgcagcagcaggaggaattagccccctctagcggcggcttcagccagttt
cacatagtggtgacagactctggctggctgttggagcctcaggagttcactgtgccagga
aaccaaagtcacctggacatctggggcctcatcaccggcataggctatgaggtcaggctg
accggggtgtcagagtcagggcttctctctcggcctctgactacagtggctgtgacagag
gccgaaccggaggtggagcatctctttctctcggacatcacggccgacggtttccgtctg
tcgtggacttctgatgaagacatgtttgacagatttgtgatcaaaataagagacagcaaa
agactagctcaccctcacgagttcagcgtccgcggcgacgaacgaaccaaggttttaact
ggactcatgagtggcactgagtatgaaatcgagctttatggtgtcacattggaccaacgc
tcccaacctattactggcgttgttcagacaggcctgagcactcctcggggacttcacttc
tcggaagtgactgactcctcggctgtagttcactggtccatgcctcgctctccggtggat
cactacagaatcacctacgtgccctttgaaggaggaaacccactgatggtgactgtggac
ggcagcgtgtttgaggctttgctgcccagcatggtccccggcaaaacataccaggtgact
gtgagctctgtgaagggtctggaggaaagcgaccccagcaccgacaccgtaaccacagct
ctggacagacctcagggcctgactgcagttaatgtcacggatgcctcagccctgttgttg
tggcaaccgtctgtggccaccgtcgacagatacgtgatcacctacagcgctgattcagcg
tcccccatggtggagcatgtttctgggaacatagtggagttcgagatgggctctctggtt
ccaggaactcactacacggtcggagtacacgctgtgaaagaaactcaaaagagcgactct
gctgttactgaattcaccacagacgtcgatccccctcgtgatctcgcagctattaacatt
caaaccgacagcgcgactctcacgtggaggcctccacaggctgccatcaccggttacacg
ctcaccttctcctctgctgatggtataatcagggaggtgatgctaagctcgacggcgtcc
tcttataacatggctcagctcactggctcgacggagtacagcgtcaaacttcaggccatc
gccggagcccagaggagtcgtcccgtcaacaccgtcttcactacgattggacagttgtac
aaacggcccaaggactgtgctcagattttgctgaatggagagacgacctctggtctgtac
accatctacgtgggcggagaggagagccagcccctccaggtttactgtgacatgaccaca
gatggaggagggtggatggttttcctcagacgccagaatggaaagctggaattctacagg
aactggaagaactacaccgctggcttcggtaacatgaatgatgagttctggctgggtctc
tccaacctccataaaatcacaaattctggccattatgagctacgagtggacttgagagac
aacacagaatcggcctacgctcagtacgacaagtttacgatcgcagagccaagatcacgc
tacaaagtctacgtcggagcgtacagtggaacagcaggtgactccatgatttaccaccag
ggccgacccttctccacctacgacaacgacaacgacatcgccgtcacaaactgcgccctg
tcttacaaaggcgccttctggtataaaaactgtcatcgtgtcaacctcatggggaaatac
ggcgacagcagtcacagtaaggggatcaactggttccactggaggggccacgaacactcg
atcggatttgcagagatgaaaatcaggccggccaacttcagaaacttcgagagcagaaaa
aagcgatcatag
DBGET
integrated database retrieval system
