Larimichthys crocea (large yellow croaker): 104931065
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Entry
104931065 CDS
T04659
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104931065
09122 Translation
03013 Nucleocytoplasmic transport
104931065
03015 mRNA surveillance pathway
104931065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104931065
03041 Spliceosome [BR:
lco03041
]
104931065
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104931065
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104931065
Spliceosome [BR:
lco03041
]
Complex C
Other components
EJC/TREX
104931065
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104931065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
104931065
NCBI-ProteinID:
XP_010744287
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All DBs
Position
XIII:7697019..7705523
Genome browser
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAAGVGDVGGAGGMSIRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDCPHIVVGTPGRI
LALTRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISELPD
EIDISSYIEPAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggacaacgagctgttggactatgaggaggacgaggtggaggcc
gcgggggtcggagatgttggaggtgcaggcggcatgtcgataaggaaggagggagtgaag
ggttcatacgtgtccattcactcctctggattcagggacttcctgctgaaacctgaactg
ctcagagccatagtggactgtgggttcgagcatccgtctgaggttcagcatgaatgcatc
cctcaggcgatcctcggtatggatgtgctctgtcaggccaagtccggcatggggaagact
gcagtgtttgttctggcaaccctgcagcagctggagcccgtcaccggacaggtttctgtc
ctggtcatgtgtcacaccagagagctggcttttcaaatcagcaaggagtatgagagattc
tcgaaatacatgcccactgtcaaggtggcagtgttcttcggagggctgtctataaagaaa
gacgaggaggtgctgaagaaggactgtcctcacattgtggttggaacaccgggaaggatc
ctggcgctgacccgcaacaagacactcaacctgcgtcacatcaaacatttcatcctcgac
gagtgcgacaagatgctcgagcagctcgacatgcgcagagacgtccaggagatattccgc
atgactcctcacgagaagcaggtcatgatgttcagcgccaccctgagcaaagagatccga
ccggtctgcagaaagttcatgcaagatccgatggaaatctttgtggacgacgagaccaag
ctgactctgcacgggctgcagcagtactacgtcaagctgaaggacaatgagaaaaacaga
aagctctttgacctcttggacgcactagagttcaatcaggtggtgatctttgtcaagtct
gtccagcggtgcgtagctctggctcagctgctggtggagcaaaacttcccagcgatcgcc
atccatcgaggaatgcctcaggaggaacgtttgtctcgctaccagcagttcaaagacttc
cagaggagaatcctggtggccaccaatctgttcggacgagggatggacatcgagagagtc
aacatcgcctttaactacgacatgcccgaagactccgacacttacctacacagggttgcc
cgggcgggcaggtttggcacgaaaggtctggctatcacgttcgtgtccgacgaaggcgac
gcccgcacgctcaacgacgtccaggaccgcttcgaggtgaacatcagcgagctgcccgac
gagatcgacatctcctcctacattgaaccagcgcgatag
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