Larimichthys crocea (large yellow croaker): 104931218
Help
Entry
104931218 CDS
T04659
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03022
Basal transcription factors
lco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104931218 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
104931218 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104931218 (ercc2)
03036 Chromosome and associated proteins [BR:
lco03036
]
104931218 (ercc2)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104931218 (ercc2)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104931218 (ercc2)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104931218 (ercc2)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
104931218 (ercc2)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104931218 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
SesA
SNF2-rel_dom
UxuA
DUF8741
Motif
Other DBs
NCBI-GeneID:
104931218
NCBI-ProteinID:
XP_027136487
LinkDB
All DBs
Position
VII:complement(26869798..26877256)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELKKLMEFYCKQTGETNNFLALALSSRKNLCIHPE
VSALRYGKEVDGKCHSLTASYIRSQRHSEPDLPLCRFYEEFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKDTDAAKLKEEYRRLVEGLKEANVARE
TDVYLANPVLPDEILQEAVPGTIRTAEHFVGFLRRFMEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHISDGSLNLTVDETIQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKIAQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgacgggctgttggtgtactttccgtatgactacatctaccctgag
cagtactcctacatgctggagctgaagaggacgctggacgctaagggtcatggagtcctg
gagatgccatcgggaacagggaagaccatctctctgctgtctctcattgttgcgtaccaa
agggcctttcctttggaggtgacgaagctaatctactgctcgagaacagttcctgagatc
gagaaggtcgtggaggaactaaagaagctgatggagttttattgcaagcaaacaggagag
accaacaacttcctggctttggccctctcctccagaaaaaacctctgcatccacccagag
gtgagcgctctgcgctacggtaaggaggttgatgggaagtgccacagtctgacggcttca
tacattcgttcacaacgtcacagcgagcccgacctgcctctatgtcgcttctatgaggag
tttgatgcagtcggccgacaggttcctcttcctgctggcatctacaaccttgacgacctg
aaagactttggcaggaggaaaggctggtgtccgtactatctggcacgctactcaatcctg
catgctaacatagtagtgtacagctaccactacctgctggaccctaagatcgctgatctg
gtgtccaaagagctggccaagaagtctgtagtggtgtttgatgaggctcataatatagac
aacgtgtgcattgattccatgagtgtgaacatcaccagacgaacgctcgaccgctgccag
aacaacgtggacacacttcagaacaccattcacaagataaaagatacagacgctgctaaa
ctgaaggaggagtacaggcgattggtggaagggctgaaggaagccaatgttgccagggaa
acggacgtctacctcgccaatcctgtgttaccagacgaaattcttcaagaggccgtccct
ggcactattcgcacagcagagcactttgttggtttcctgagacgtttcatggagtacctg
aagtctcgtctgagggttcaacatgtcgtacaggagagcgccccgcagttcctcaaagac
atatttgacaaagtctgcatcgaccgcaagcctctcaggttttgtgcagagcggttacag
tccttactaagaactctggagattgccgacatcgcagacttctcagctgttacactcatc
tccaactttgctaccctggtcagcacatacagccaaggttttaccatcatcatcgagccc
tttgaagacagaactccaaccatcgccaaccctgtgctgcacttcagctgtatggacccg
tctatagccatcaaacctgtttttcaaaggttccagtcagtcattatcacctctgggact
ctctctccactggacatctatcccaaaatcctcgacttccgcccagttaccatggcatct
ttcaccatgacgctggcacggacatgcctctgccctctgatcgttggcagggggaacgat
caggtggccctgagctcgaagtttgagaccagagaagactttgctgtgattcgtaactat
ggtaaccttctcctggagatgtctgcgatcgttcccgatggcattgtggcgtttttcacc
agctacgtctacatggaaaacatagtggcgtcttggtatgaacagggtatcctggagaat
atccagagaaacaagctgatcttcatagagactccggatgctgcagagacgagcatggcc
ctggagaaataccaggaggcctgtgagaacggcagaggagccatcctgctgtctgtagcc
aggggaaaggtctccgaaggaatcgatttcgtgcaccactttggccgagcagtcatcatg
tttggagtgccttatgtttacacgcagagccgcatcctaaaggctcgtctggagtacctt
cgggatcagtttcagatcagagagaacgacttcctgacgtttgatgccatgcgtcatgcg
gcacagtgtgtgggcagagccatcagaggcaaaacagactacggactcatgatttttgct
gacaagcgttatgcccgagcagacaaacgtggaaagcttcctcgctggatccaggagcac
atcagtgacggcagtctgaacctcacagtggacgagaccatccagctctccaagcacttc
ctgcggcaaatggctcagccgtttagacaggaggaccagctgggcctgtctctgttaact
ctcgagcagctggagtcagaggagatgctgcagaaaatcgcccagattgctcatcagacc
tga
DBGET
integrated database retrieval system
