Larimichthys crocea (large yellow croaker): 104931226
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Entry
104931226 CDS
T04659
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04137
Mitophagy - animal
lco04140
Autophagy - animal
lco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104931226
04137 Mitophagy - animal
104931226
04148 Efferocytosis
104931226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104931226
Transcription factors [BR:
lco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
104931226
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Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
104931226
NCBI-ProteinID:
XP_019121102
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All DBs
Position
VII:complement(27033238..27048213)
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AA seq
684 aa
AA seq
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MKDKQEAAAAKRTSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVSTHLDKSAIM
RVSLSFLWLQRLLRPGGEKQKEEVKEEETEKKEEEEEDEEEEEEGDPMDSFYPQALAGFI
MVMTEEGDMIYLTENVNRHIGITQLELLGQSIYDFVHPCDQEELRDLLTPRPGLSKKPLS
EQPTERNFFLRMKSTLTSRGRTVNIKSATWKVLHCTGHVRPFGGGSTSPPAARVMTLLCE
PIPHPSSVEFPLDTCTFLTRHSMDLRFTHCEGRVTELVGYKPDDLIGRSAYEFHHALDSD
HVNKSLHTLLSKGQVNTSHYRFLANSGGFVWAETQATVLYSSKTSQPEAVVCLNFILSAV
EQPDVVFSVEQIRCGQAKTHTPAECGADIDDCKPDIDPLTDVTQTEDAASDSSSSADLFL
KLKEQPGELLQLAPEAGDVIVPLTDFVELSFFSGSSPDSVPDHPQDLCTPQLRQLLSPIF
NPISPPVSLLSPVSSLDPEPSSPSEEVMDTSEVEKFFAICPEDVQKKGDAKDDMEGMDLE
MLAPYISMDDDFQLTFLSGLPEESDKPSSDSSAGTSAVPLSRKRTHIPDEELLSHLMIQD
KRQKQEASSIEEELLLSHRLLGCLDETDQSDLVLDPRPGGRSRLLTDRDPLLGGIQGLCD
TAALMRDIFIPRPPDLSPPLSPMT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaaacaggaggccgcggcggccaaacggaccagttcggagcagaggaagctg
cgttcgcgtgatgcagccagatgtaggcggagtcaggagacggaggtgttttatgagctc
gcccgcactctgccactcccacgtcgagtctccactcacctggacaagtctgccatcatg
agggtctccctcagcttcctgtggctgcaacgcctcctccgacccggaggtgagaagcag
aaagaggaagtgaaggaagaggagacggagaagaaggaggaggaggaggaggacgaggag
gaggaggaggaaggagatccaatggactctttctatcctcaggcgctggctggcttcatc
atggtgatgactgaggagggagacatgatttatctgacggagaacgtcaacagacacatc
ggcatcacacagctggagctgctgggtcagagtatttacgactttgttcacccctgtgat
caagaggagctcagagatctgctgactccacgtccaggtttgagtaagaagccgctgtca
gaacagccgaccgagaggaacttcttcctacgaatgaagagcactctgaccagcaggggg
cgcaccgtcaacatcaagtctgcaacctggaaggttcttcactgcacaggtcacgtgcgt
ccatttggcggcggatccacgtcgccccctgctgcgcgggtgatgactctgctgtgtgag
cccatccctcacccctccagtgtggagttccctctggacacctgcaccttcctcacccgc
cacagcatggacctgcgcttcacacactgcgagggcagggtgacagagttggtgggatac
aagcccgatgatctgattggccgctcggcttatgagtttcatcacgcgctcgactcagat
cacgtcaacaagagcctgcacacactgctgtccaaaggtcaagtgaacaccagccactac
cgtttcctggcaaacagcggtggcttcgtctgggccgagactcaggcgaccgtcctctac
agcagcaagacgtcacagcccgaggccgtcgtctgccttaacttcatactcagtgccgtg
gagcagccagacgttgttttctccgtcgagcagatccgatgtggtcaggctaaaacacac
acaccagcagagtgtggggcagacatcgatgactgtaaacctgacattgaccctctcacc
gacgtcactcagactgaggacgcagcttcagattcaagcagctctgcagatctcttcctc
aaactgaaggagcagccaggggagctcctccagttggctcctgaagctggagacgtcatt
gtgccgctgacagattttgtcgagctgtcgttcttcagcgggtccagtccagactctgtg
ccggaccacccccaggatctgtgcactccacagctgcgacagctcctctcacccatcttc
aaccccatctctccacctgtgtcattactatcaccagtctcctcacttgatcctgagccg
agctcaccctctgaggaggtgatggacaccagtgaggtggagaagttctttgcaatttgc
ccggaagatgttcagaagaaaggagacgcaaaggacgacatggaggggatggatctggag
atgttggctccttacatctccatggacgatgacttccagctcaccttcctcagcggtttg
cctgaggaatcagacaaaccctcgtctgattcctcagctgggacatctgcagtccctctg
agcaggaaacggactcacatcccagacgaggagctgttgtcccatctgatgattcaggac
aagagacagaaacaagaagcttcctcaatagaagaggaacttctgctcagccacagatta
ctgggctgtctggatgaaaccgaccaatcagatttggtcctggacccgcgacctggaggg
cggagtcggctgctcacagacagagacccactgttaggaggcatacagggactctgtgat
actgcagctctgatgcgggacattttcatacctcgcccacctgacctgtcgccacctctc
tcgcccatgacctga
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