Larimichthys crocea (large yellow croaker): 104931389
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Entry
104931389 CDS
T04659
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lco03016
]
104931389 (rtcb)
Enzymes [BR:
lco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104931389 (rtcb)
Transfer RNA biogenesis [BR:
lco03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104931389 (rtcb)
Prokaryotic type
tRNA splicing ligases
104931389 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
104931389
NCBI-ProteinID:
XP_027128037
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All DBs
Position
XX:18507671..18512624
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKVSSCCWRIRKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataacgacgagctgcagtacctggacaaggtgagcagctgctgctgg
aggatccggaaaggcttcgtgcccaacatgcaggttgaaggaaacttctacgtcaacgat
tcgctggagaagctgatgtttgaggagcttcgtaacgcctgtcgaggaggaggtgtgggt
ggattccttccagccatgaaacaaattgggaacgtggcggcgctgccaggaatcgtgcac
aggtccatcggtctccccgacgttcactccgggtacgggttcgccatcggaaacatggcg
gccttcgacatgaacgacccggacgccgtcgtgtctccaggtggcgtcggtttcgacata
aactgcggcgtccgtctgctgaggacgaacctggacgagggcgacgtccagccggtgaag
gagcagctcgcccagtcgctgttcgaccacatcccggtgggagtcggatccaagggagtc
atcccgatgggagccaaggacctggaggaggctctggagatgggggtggactggtctctg
agggagggttacgcctgggccgaggacaaagagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaagtctcatcgaaggccaagaagagaggcctgccgcagctggga
actctgggagcaggaaaccactacgccgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagc
ggcagcagaggccttggacaccaggtcgccacagacgctctggtcgccatggagaaggcg
atgaagcgagacaagatcacggtgaacgaccggcagctggcgtgcgctcgcatcacgtca
caggaaggacaggactacctgaaggggatggctgctgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttctccaaagtgttcggcaccacgccg
gacgacctggacatgcacgtcatctacgacgtctctcacaacatcgccaaagtcgaggag
cacatcgtggacgggaagcagaagacgctgctgatccaccgcaaaggctccacccgagcc
ttccccccacaccaccccctcatcccggtcgactaccagctcacaggtcagccggtgttg
atcggagggacgatgggaacctgcagctacgtcctcacaggaaccgaacaaggcatgacg
gagacatttggcaccacctgtcacggagcgggtcgcgctctgtctcgagccaagtcccgc
aggaacctcgacttccaggacgtcctggacaaactggccgaccagggcatcgccatccga
gtggcttcacccaaactggtcatggaggaggctcctgaatcgtacaaaaacgtgacggac
gtcgtcaacacgtgtcacgaggctggaatcagtaagaaggcgatcaaactgaggccgatc
gccgtgatcaaaggctga
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