Larimichthys crocea (large yellow croaker): 104932078
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Entry
104932078 CDS
T04659
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
lco04137
Mitophagy - animal
lco04144
Endocytosis
lco04340
Hedgehog signaling pathway
lco04350
TGF-beta signaling pathway
lco04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104932078 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
104932078 (smurf1)
04350 TGF-beta signaling pathway
104932078 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104932078 (smurf1)
04137 Mitophagy - animal
104932078 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
104932078 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104932078 (smurf1)
04121 Ubiquitin system [BR:
lco04121
]
104932078 (smurf1)
03029 Mitochondrial biogenesis [BR:
lco03029
]
104932078 (smurf1)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104932078 (smurf1)
Membrane trafficking [BR:
lco04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
104932078 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
104932078 (smurf1)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
HECT type E3
104932078 (smurf1)
Mitochondrial biogenesis [BR:
lco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
104932078 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Orbi_VP6
Motif
Other DBs
NCBI-GeneID:
104932078
NCBI-ProteinID:
XP_027140979
LinkDB
All DBs
Position
XII:2310839..2327877
Genome browser
AA seq
738 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPSQENRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQAKESSQAPQMDVGGEEVGGGGVGGVGGGGVGGGGGDGDVAARYERDLV
HKLKLLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLD
YGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLA
VFHGHYINGSFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEH
NAFGKFLQHELKPNGRNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHL
LKPFDHKELELIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQ
FVTGSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEK
LYEKLLTAVEETCGFAVE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcggaggaacgggtccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgccttcccgatccatttgccaaggtt
gtggtggacggatcaggtcaatgccactcaaccgacacagtcaagagcacactggaccca
aaatggaatcagcactacgacctctacattggaaagacagactccatcactatcagcata
tggaaccacaaaaagatccataaacgacagggggcgggcttcctgggctgcatacggctt
ctttccaatgccatcagcaggctaaaagacacaggataccagcgtttagatctatgtaag
ctgaacccctcggacagtgacgcagtgcggggacagatcgtagtgagcttacagacgcga
gatcgcatcggcagcggaggacctgtggtggactgcagaggactgttggaaaacgatggg
cctgtgtttgagggatgtttcagcgaagagccgctgccttactccgacccaaccggcgca
gcaggaggcgggaactgtcggctcgactcgcccagccaggagaaccgccttcagacgcag
cgaatcagagggcaggattcgagaggccacggccacacccctcagaacagacctcacggg
caccaaccgcctgacctgccagagggatacgagcagcgaacaacagtgcaaggccaggtg
tacttcctccacacacagacaggcgtcagcacctggcacgaccctcggataccgagggac
ctggccagtgtgagctgcgaggagctcgggccgttgccagtgggctgggaggtccgaagc
accgtgtcgggtcgtatctacttcgtggaccacaacaaccgaaccacgcaattcacagac
ccgcgcctacacaccatcatcagccagcaatcccaagcgaaggaatcctcccaggccccc
cagatggacgtggggggcgaggaggtgggaggtggaggagtgggcggcgtcggaggaggc
ggcgtcggaggcggaggtggagacggagacgtggcggctcgctacgagagagacttggtc
cacaagttgaagctgctccgtcacgagctgtcgctgcagcagcctcaggcgggacactgt
cgcatcgaggtgtcccgagaggagatctttgaggagtcgtatcgacaaataatgaagatg
aggcccaaagacctgaagaagcgactcatggtgaagttcagaggtgaagaaggtctggac
tacggcggggtcgcaagggagtggctgtacctgctgtgtcatgaaatgttgaacccctat
tacggcctgttccagtactccacagacaatatctacacactacagatcaaccccgactcc
tccatcaaccctgaccacctgtcatacttccactttgtgggtcgcgtgatgggcctggca
gtttttcatggtcactacatcaacgggagcttcacgctacccttctacaaacagctgcta
ggtaaaccgatccagctcaacgacctggagaccacagacccggagttgcacaagagcctc
gtctggatattagagaacgacatcacttcagtcctcgaccacacgttctgcgtggagcac
aatgccttcgggaagttcttacaacatgaactcaaacctaacggccgcaacatcccagtc
accgaggagaacaagaaagaatatgtgagactttatgtgaactggaggtttatgcgtgga
attgaagcccagtttctggctctacagaaaggattcagtgagctgatcccccagcacctc
ctcaaaccctttgaccataaagaactagagttgatcatcggtggactgggtaaaatagat
ctcgcagactggaagaccaacacgcgcctgaagcactgcacaagcgaaagcaacgtggtg
cggtggttctggcaggcggtggaggcattcagcgaggagaggagaggacgcctcctgcag
ttcgtcaccggctccaccagggtccccttacaggggttcaaagcgctgcagggttctaca
ggttctgcaggaccaaggctcttcaccatccatttgatagacgccaacacagacaacctg
cccaaggctcacacgtgttttaaccggatagacatccctccctacgagtcttacgagaaa
ctttacgagaaactgctgacggctgtggaggagacctgcggcttcgctgtggagtga
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