Larimichthys crocea (large yellow croaker): 104932354
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Entry
104932354 CDS
T04659
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04382
Cornified envelope formation
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104932354 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104932354 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104932354 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104932354 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104932354 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104932354 (col4a2)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104932354 (col4a2)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104932354 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104932354
NCBI-ProteinID:
XP_019116715
LinkDB
All DBs
Position
XVIII:17478995..17540137
Genome browser
AA seq
1673 aa
AA seq
DB search
MSGTMQGQHNRGLKNLRLLLLCVSIAILASEVHAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGPLGTQGSQGPLGRPGDPGIQGPKGQKGDQGFGGAIGPKGSLGMTGVPGFSGNDGI
PGHPGQAGPRGRPGADGCNGTQGEPGSPGQPGYNGSPGFHGHPGTKGAKGDSLELSVYME
RFRGDPGYSGQNGIFGPPGLPGWHGNRGIPGPKGPPGPPGPPGPKGTMTKVLKGVKGSPG
DAGPPGPPGNSTHQQTGPVTGPPGNKGQKGELGDLADNKGETGVMGFPGPRGESGVDGRP
GLRGDLGEPGPNGRDGPKGVRGDPGELISSGSFWPWPSVGLTGPPGKDGPKGERGPIGDQ
GLPGPPGPPAYDSQQQVFDFMGPFGFKGEAGDKGEQGDRGLTALSPGPPGSPGRQGVMGE
PGPTVTWADLFKGPPGGRGRPGIPGHKGMKGDHGECQCTIVNSPVGPPGPAGDPGDAGMT
GEFGQQGDVGDPGPHGETGFPGPAGLSGIPGPKGQKGKDSVATEKGYSGDPGDPGRDGDP
GVPGAPGRAGLPGFPGAQGFRGEGPTGERGDKGFPGLPGRPGVAGQRGEPGADWIGIKGQ
RGLPGDDGIAGHHGVPGLPGSPGGCSPTRDGGQVDVTGPCEAIPGSPGPPGHPGPSGLPG
VPGYPGPKGSVGHFGVQGEKGETGEYGIGGRTGPPGFSGPRGDSGHDGTKGVEGIRGLPG
RAGRYGPEGEKGPHGEIFGASQGPPGDPGYQGLQGNKGQTGDPGEPGYPGMPGMPGMIGY
KGESGPHGLQGEEGKPGPAGKYGYPGDPGSAGLPGPHGETGRPGVTGERGTEGDPGPPGP
IGLKGVPGLHGADGVIGESGPIGDPGLPGEEGRPGVPGMKGYKGSAGMAGFEGIRGDKGP
KGFSGLSGEPGFPGQTGLKGVMGQSGPKGDRGLDGPPGDKPHIPASVMKDMKGAKGDTGY
AGNQGFTGQRGIKGLPGVPGYEGSHGLPGDPSTKKGYQGDPGAQGLPGIKGMPGLTGNRG
ITGFEGMPGDRGTKGSPGAYGASGDKGRKGIKGEKGPRMDVPGTTGVRGEYGIPGEPGEK
GLTGTPGERGTPGFDGIEGKRGEAGDPGISGNPGSDGQTGTPGDQGEKGFPGIPGKDGHP
GFPGFPGNRGFVGLKGLYGLHGLKGQKGLPGAAGLDNVGPAGETGVKGEKGEDGEPNNQP
GFPGTDGLKGFQGPQGDHGQPGPVGFRGPDGQQATPGKPGPSGDPGSIGPKGYYGLPGDR
GFPGVDAPPGEKGIQGKNGFPGIPGRKGFKGDQGPLGYRGPNGISGKKGVKGEQGFMGVP
GVVGLKGERGPSGPKGNSGPPGYRGIPGNKGSPPIPIRVPGERGPPGPQGIRGPGGVKGQ
PGPHGPPGEPGFMGPIGQKGMPGISGTPGTPGFRGTVGQMGHPGLQGMEGHRGHPGIPGL
PGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCL
PRFSTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSV
AIAVHSQDITIPQCPAGWRSLWIGYSYLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIEC
NGAKGTCHYFANKHSFWLTSVDQSFHADPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaaggacaacacaacagaggactgaagaacctgaggctgctgctt
ctgtgcgtctccatcgccatcctcgcctcagaagtgcacgcgggtgggaagaagcacagt
ggcccctgtggaggaagagactgcagcggaggctgtcaatgtttcccagagaagggtgcc
agggggcagcccgggcctcttggtactcagggttcccaagggcctttggggagaccaggt
gatccaggtatccaaggaccaaagggccagaaaggtgaccagggctttggtggcgccata
ggtcctaaaggaagtttgggaatgacaggcgttcctgggttttctggaaacgatggtatt
cctggacacccaggacaagctgggcccaggggtagaccaggtgcagatggctgtaatggc
acacaaggagaaccagggtcaccgggtcaaccgggctataatggatcccctggttttcat
ggacacccaggcacgaagggagcgaagggagactctctggagctgagcgtctacatggag
cgtttcaggggagatccaggatattcaggacaaaatggaatatttgggcctccgggactc
ccaggatggcacggcaacagagggatcccagggccgaagggtcccccagggcctcctggt
ccccccggaccaaagggcacgatgaccaaagtgctgaagggagtcaaaggaagcccaggg
gacgctggacctccagggcctccaggaaactctacccatcaacaaactggacctgtcacg
ggacctcctggcaacaaaggtcagaaaggagaactaggagatctggctgacaacaaagga
gaaactggtgtgatgggtttccctggtccacggggtgagtctggtgtagatgggcgtcct
ggacttaggggggatctcggtgaaccaggaccaaacggcagagatggtcctaagggagtc
agaggtgacccgggagaactgatttcatcaggatccttttggccttggccttcagtagga
ctaaccggtcctcctggtaaggacggtccaaaaggcgagaggggcccgattggagaccag
ggcctgcccggacccccaggaccacctgcctatgattcacagcaacaagtgttcgacttc
atggggccgtttggttttaagggagaagcgggagataaaggcgaacaaggagatcgagga
ctcactgctctcagtccaggacctccaggcagccctgggcggcaaggtgtcatgggggag
ccaggacccactgttacatgggctgatttgtttaaggggcctcccggcgggagaggaaga
cctggcatcccaggccacaaaggaatgaaaggtgatcatggagaatgtcagtgcaccatt
gtgaactctcccgtgggtccacctggccctgctggtgatcctggtgatgctgggatgacg
ggagagtttggtcagcagggtgatgtaggagacccaggtccccacggagagaccggattc
cctggaccggctggactcagcggtattccaggcccaaaaggtcaaaaagggaaggactcc
gtggccactgagaaaggatattctggagacccaggagatcctgggcgagatggtgaccca
ggagtgccaggcgctccgggccgagctggtttgcctggtttccccggggcccaaggtttt
cgaggggaaggtcccacaggagagcgtggagacaaaggtttcccaggtctgcctggtcga
cccggtgtagctgggcaaaggggagaaccaggtgcagactggataggcatcaaaggccag
cgtggtttacctggagacgacggcattgcgggtcatcacggagttccaggactacctgga
agcccaggcggctgtagtccaacacgagatggaggacaggtggatgtaacaggtccttgc
gaagctattccaggatctcctgggccgcctggacatcctggaccatctggattaccgggt
gtcccaggttatccaggcccaaagggatcagtgggtcattttggagtacagggagagaag
ggagaaacaggagaatatggcataggtggacgtactggaccaccaggtttttccggaccc
cgtggagattcggggcatgatggcactaaaggtgtagaaggaatccgtggattgcctggt
agagccggccggtatgggccagaaggtgagaaaggtcctcatggagagatctttggagca
tctcaaggaccccctggtgacccaggctatcaagggcttcaaggaaataaaggccaaact
ggtgatccaggagagccaggatatccaggaatgcccggcatgcccggtatgatcggctac
aagggtgagagtggccctcatggtctgcagggtgaggaagggaagcctgggcctgcgggc
aaatatggctaccctggtgatcctgggagtgctggtctacctgggccgcatggtgaaacc
ggacgaccaggtgtcacaggagaaaggggaactgaaggagaccccggccctccaggtcca
ataggattaaaaggtgtcccagggctgcacggtgctgatggtgtcattggagagtctggc
ccaataggtgacccaggactgcctggtgaagaggggcgcccaggagttccaggaatgaag
ggatacaaagggtctgctggcatggcaggttttgagggtatcagaggtgataaggggccg
aagggcttcagcgggttgtcaggagaacctggatttccaggccaaactggtctaaaagga
gtgatgggtcaaagcggaccaaaaggtgatcgtggtttggatggaccacccggagacaaa
cctcacatccctgccagtgttatgaaggacatgaagggagccaagggagacactggatat
gcaggaaatcaaggtttcaccgggcagagaggtattaagggtttacctggtgtgccgggt
tacgagggatctcatggtcttcctggagaccccagcactaagaaaggttaccaaggagac
ccaggagcacaggggctgccagggatcaaaggaatgccaggcctgactggaaatcgagga
attactggttttgagggaatgcccggcgacaggggaactaaaggaagtcctggtgcgtac
ggtgcatcaggagacaaaggaaggaagggcatcaaaggtgagaaaggccctcgtatggac
gttccaggaacgactggagtcagaggagagtacggtattccaggggaaccaggagagaaa
ggattaactggaacacctggggagaggggtacacctggttttgatggtattgaagggaaa
aggggagaggcaggtgaccctggaatatcaggaaacccaggttcagatgggcagacggga
actcctggtgaccaaggtgaaaaaggctttcctggaattcctggaaaagatggacaccca
ggatttcctggcttcccaggaaacagaggtttcgtcggcctgaagggtctttatggattg
catggactgaagggacaaaagggtctccctggagctgcaggtctggataacgttggacca
gctggagaaacgggggtcaaaggagagaaaggagaggacggtgagcccaacaaccagcca
ggttttcctggcacagacggtttgaagggcttccagggacctcaaggtgaccacggtcaa
cctggaccagtaggattccgcggccctgacggacaacaagcgactccaggaaaaccagga
cccagtggggaccccggctctattggaccaaaagggtactacggtcttcctggagacaga
ggatttcccggtgtggatgctcctcctggagaaaagggtattcaaggaaaaaatggtttt
cctggaatccctggtaggaaaggattcaaaggagatcaaggtccattgggatacagaggg
ccgaatggtatttctgggaagaaaggtgtgaaaggagagcaaggatttatgggagttcca
ggtgtggttggtctgaagggagaaagagggccatccggtccaaaaggaaatagtggaccc
ccaggttaccgtggaatccccggcaacaagggctctcctccaattcccatccgggttcct
ggagaaaggggccctccaggaccacagggtatccgaggaccaggcggggttaaagggcaa
ccaggaccacacggtccccctggggaaccaggtttcatgggacccattgggcagaagggc
atgcctgggatcagcggcacaccaggaacacctggatttcgtggaacggttggacaaatg
ggccaccccggtctgcaaggcatggaaggtcaccgtggccaccctggtatcccagggtta
cctggcatgcctggccgcagcgtcagcgtcggttacttgctggtgaaacacagtcagtca
gagcagacgcctatgtgtcccgtcggcatgtcgaaactgtgggacggctacagtctgctg
tacctcgaaggccaggaaaaggcccacaaccaggacctgggtttggccggctcttgcctc
ccgcggttcagcaccatgcccttcctgtactgtaaccctggagacctttgttactacgcc
agcagaaacgacaagtcctactggctgtcaacgaccgctcctcttcccatgatgcccgtc
gaagagggagagatcaaaccgtacatcagccgctgctcagtgtgtgaagctccgtcggtc
gccatcgcggtccacagccaggacatcaccatcccacagtgtcctgcgggctggcgcagc
ttgtggatcggctactcctatctcatgcacaccgcagctggaaacgaaggcggaggtcag
tccttgtcatcgcccggctcctgcctggaggacttccgcacgacaccattcatcgagtgt
aacggggccaaaggcacatgccactactttgcaaacaagcacagcttctggctaacatcc
gtagatcagtcgttccacgccgatccgtcatcggagacactcaaagcgggtcagctcctg
tcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system
