Larimichthys crocea (large yellow croaker): 104932972
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Entry
104932972 CDS
T04659
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104932972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104932972
03009 Ribosome biogenesis [BR:
lco03009
]
104932972
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104932972
Spliceosome [BR:
lco03041
]
Complex A
U1 snRNP components
U1 related factors
104932972
Complex B
104932972
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
Pre-60S particles
Helicases
104932972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104932972
NCBI-ProteinID:
XP_010746618
UniProt:
A0A0F8BJR1
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All DBs
Position
X:complement(27862252..27870500)
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AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHPDATRRPLQEVEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIGKQNWT
EPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKSAFGGNKAQNG
GSYGGNSGNSSSSYGNNNYSNSNGQGNFGAPTNQVGAFGNQSFQGPPQFGGMQRAAQNGM
NHPPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagggatcgtggcagagacagagggtatggtggaggaccccct
cgttttggtggtggtggtggaggaggcaataggggcggacctcctccaggaaagtttggc
aaccccggtgagaggctgcgaaagaagcactggaacctggatgagcttccaaagtttcag
aagaacttctaccaggaacatcctgatgctactcgcagaccacttcaagaggttgaacag
taccgaagaagcaaagaagttacagtcaaaggcagagactgccccaaaccaattgtaaaa
ttccatgaagctgcttttccaagctatgtcatggatgtcattggcaaacagaattggact
gaaccaactcccattcagtctcaggggtggccagttgccctgagtggcaaagacatggtt
ggcatcgctcaaactgggtctgggaaaacccttgcataccttctgcctgcaattgtgcac
attcaacatcagccattcttggagcatggagatggacctatctgcttggtgctggcacca
acccgtgagttggctcagcaggtgcaacaagtggctgctgaatacggcagggcctcccgt
ctcaagagtacctgcatctatggcggtgcacccaaaggaccccaaatcagggaccttgag
aggggtgtggagatctgcattgctaccccaggtcgtctcattgacttcctggagtgtggt
aagactaatttgcgtcgttgcacttatctggtgttggatgaagctgaccgcatgcttgac
atgggatttgaacctcagatccgcaagatagtggaacaaattcggccagaccgtcagacc
ctgatgtggagtgccacctggcctaaggaagttcgccagctggctgaggacttcctaaaa
gactacgtccagatcaatattggtgcactgcagctcagcgccaatcacaacatcctgcag
atagtggatgtttgcagtgatatggagaaggaggacaaactgatccgtctgctggaggag
ataatgagtgaaaaggagaacaagaccattatttttgtggagaccaaaagacgttgtgat
gagctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagataaa
agtcagcaggagagggactgggtccttaatgagttcagatatggtaaagctccaatcctc
atcgcaacagatgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgaagt
caaaaaacgggcacagcctacactttcttcacccccaacaacatgaaacaagccagtgac
ctgatctctgtgctccgcgaggccaaccaggccattaacccaaagctgatccagatggca
gaggacagaggaggtcgtggaagggggggaagaggtggctacaaggatgaccgtcgcgat
aggtattccgggggtgggaggagcaattttggcggtagcagctacagggacagggacagt
gatagagggtttggcaatgggccgaaaagtgccttcggtggcaataaggcccaaaatggt
ggcagctatggaggtaacagtggtaactctagtagtagctatggcaacaacaattacagc
aacagcaatggacagggtaattttggtgctccgacaaaccaggtgggtgcctttggtaac
caaagcttccagggccctcctcagttcgggggaatgcagagggctgctcagaatggcatg
aaccacccgccgttcccattcaactctcagccaccaccaccacaggcccaacaaccacca
cccccaccaccaatggtgccctaccccatgccaccacccttccctcagtag
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