Larimichthys crocea (large yellow croaker): 104933149
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Entry
104933149 CDS
T04659
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor
KO
K20286
TATA element modulatory factor
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104933149 (tmf1)
Membrane trafficking [BR:
lco04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104933149 (tmf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
HrpB7
SlyX
Motif
Other DBs
NCBI-GeneID:
104933149
NCBI-ProteinID:
XP_010746833
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Position
VI:complement(4239683..4250028)
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AA seq
1161 aa
AA seq
DB search
MSWFNASHLSSFAKQALTSAQKSIDRVLDIKEEDQWGDTVVMPYEDVTLPGKLSLSGGWG
LTQWEAPPEEKTTTPPPSSEAITTPVTRTVVDESENFFSAFLPPGDVQGVTKAQVVSVPP
TKSQRRPQEKNKKNKEAVVQKEEETSAPVDKSHEDQTVAESQPLELDSSPATPYADAGVV
LEPVVCPASSPGDLLSDSDSKTSSVKTDVGPTLDLKTEPSLQASSELEVEQDTTDSSEPS
AVISEPKSSTPSDTSSHPSSKEGLIEQKDSKVEDRQNDTPSPPVSAFSSGTSTTSDIEVL
DHESVLSESSASSRQETGEGKAGLHLMQGSFQLLTASTCGDFHRLEDYSKLTESCGSSSD
AFERIDSFSVQSLDSRSVSEVNSDDEIPGSRTLASVTAGPAPLTVSSAVCQKQEDGVMVE
AGEEEEKEEEEEGFTETMRERSLDEMEESGRSATPVNSEQPEELTEQEQEPEANITLTDP
ASITEEQIILPITEEMKSFSTVQILELQKVIDELSGRLEKRESQLLTVSKDKARLEEECD
NLKDEVVSLKEESSTVQSLKDEFTQRIADAERKAQLACKERDIAKKEIKGLREELSTRLN
SSDTMEIIREKEEQIRGLLEEGEKLSKQQLQHSNIIKKLRVKEKESDTRIIKQQKKIKEQ
DEELKQLQQVLDGKEEVEKQHRENIKKLNAVVERQEKEVSRLQTENDELQEKNRSVQAAL
DNSYKELAELHKANVSRASEAEEAALSRDTQAKEQLSLALEKAQEEARIQQEALADQVAD
LRLALQRAEQQQARKEDYLREEISELQQRLQEAETRNQELSQSVTSATRPLLRQIENLQA
SLGGQTASWEKLEKNISDRLADAQAQLAVAVEKERSATEELLSIKSQLASLESQNSLVRQ
EKGRLLAQLDAEKNKREKLEDDSSREHAELENLRGEHIRMLEDAKREKLLLTNQLEMEKM
RVEQEKKKCYLAQEALKEKERKAMTHSVGEPPASSTPSLSRSSSISGPDNAGLHTSILSQ
DDSLDHSLSTMTMSVSMSGTNLYEAARLSGGSSIMENLQSQLKLREGEIAQLQLEISSLE
RSRSVMAEELVRLTNQNDEMEEKVKEIPKLKIQLKDLEQRHNTILQMYGEKAEEAEELRL
DLEDVKNMYKTQIDELLQNQK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagttggtttaacgcatctcacctgtccagcttcgctaaacaagctttgacatcagct
cagaagtcaatcgaccgggttctggacatcaaagaggaggaccagtggggtgacacagtt
gtaatgccatatgaagatgtcacattgcctggaaagctatcattaagtggaggctgggga
ttgacccagtgggaagctccccctgaagaaaagaccaccactcctcctccttcctctgag
gccattactactcctgtaacccgcacagttgtggatgaatccgaaaactttttcagtgcc
tttctgccacctggagatgtacaaggtgtgaccaaagcccaggtagtgtctgtgccccct
actaagtctcaaaggcggcctcaggagaagaacaagaaaaacaaagaggcagtggtccaa
aaagaagaggaaacatcagcgcccgttgataagagtcatgaggatcagacagtggctgag
agccagccccttgagctcgattcctcgccggcaacaccttacgcagacgctggagtcgtc
ctggagccagtggtgtgtcctgcatcttctcccggtgatcttttgagtgacagtgacagc
aaaacgagcagtgtgaaaacagatgttggcccgacattagacttaaaaacagagccgtca
cttcaggcttcatcagaacttgaggttgaacaggataccacagattcttctgaaccgtct
gccgtcatttccgaacctaaaagctcgaccccttctgatacttcatctcacccgtcctct
aaggaaggacttatagagcaaaaagactcaaaggtggaggaccgtcaaaatgataccccc
tctcctcctgtcagcgctttctcctcaggaacctctaccaccagtgacattgaagtgctt
gaccacgagtctgtgttgagtgagagctcagccagctccagacaagaaactggggaaggc
aaggctggccttcacctaatgcagggctctttccagcttctcactgcctcgacctgtgga
gatttccaccgtctggaggactactccaaactcacagaaagctgtggctcctcctcggat
gcatttgagcgcatagattcattcagtgtgcagtcactggacagcaggagtgtcagtgag
gttaactcagatgatgagatacctggcagtcggacactagcgtccgtcactgcaggccct
gctcctttaacagtgtcatcagctgtgtgtcagaagcaggaagatggagtaatggtggag
gcaggagaggaggaagagaaggaagaagaggaagagggttttactgaaacgatgagagag
cggtcgctggatgagatggaagagagtggacgcagtgcaacgcctgttaatagtgagcag
ccggaagagttgacagaacaagaacaggagcctgaggctaatataacactaactgatccc
gcctccattactgaagaacagattattctaccaatcacagaagagatgaaaagtttctca
acagttcagattttggagcttcaaaaggtcattgatgagctgtcaggccgccttgagaag
agagagtctcagctgctgacggtcagcaaagacaaagccagactggaggaggagtgtgac
aatctcaaagatgaagtggtaagcctgaaggaggagagctccactgttcagtccctgaaa
gatgagttcactcagcgcatagcagatgcagagagaaaggctcagctggcttgcaaagaa
agagacatagccaagaaggaaataaagggcttgcgggaagagctttctacaagacttaac
tccagtgatacaatggagattatcagagagaaggaagagcagatccgaggactgctggaa
gaaggtgaaaagctatccaaacagcagcttcagcacagcaacatcatcaagaaactacgt
gtgaaggagaaggagagcgacaccaggatcatcaagcaacagaagaaaatcaaggagcag
gatgaggagctcaagcaactgcagcaggttctagatgggaaggaggaggtggagaaacag
cacagggaaaacatcaagaagctgaatgccgtggtggagcgtcaggagaaggaagtgagc
aggctgcagacagagaatgacgagctgcaggagaagaacaggagcgtgcaggctgctctc
gataactcttacaaggagctggcagaacttcacaaggcgaatgtcagcagagccagtgag
gccgaagaagcagctcttagcagagacacacaggccaaggagcagctgagtctggctctt
gagaaggcccaggaggaggccaggatacaacaggaggccctggcagatcaggtggctgac
ttgagactggctctgcagagggctgagcaacagcaagcaaggaaagaagattatctgagg
gaggagatcagtgagctgcagcagaggctacaggaggctgagactaggaaccaggaactc
agtcagagtgtcacctctgcaacacggcccctgctgcgacaaattgagaatttacaggct
tcgctgggcggacagacagcatcctgggaaaaactggagaagaacatctctgataggctc
gcggatgcccaggcacagctggctgtggctgtggaaaaggagcgttcagcaacagaagaa
ctactgtccatcaaatcccagctggcttctctagagtcccagaattccctggtccgccaa
gagaagggccgacttctggcacagctggatgccgagaagaacaagagagagaaactggaa
gatgacagcagcagggagcatgctgagctggaaaatctgcgaggagaacacatccggatg
ctagaagatgccaagagggaaaagctgttgctgaccaatcaattagagatggagaagatg
agggtggagcaagagaagaagaaatgctatttggcacaagaagcactcaaggagaaggag
cggaaggccatgacacactctgtaggagagccaccagcctcctccacaccctccctgtcg
cgctccagctccatcagcgggccagacaatgccggcctgcacacctccattctttctcag
gatgattctttggaccattcactgagtaccatgaccatgtctgtgtcaatgagcgggacc
aacctgtacgaggccgccaggctgtctggaggctccagcatcatggagaaccttcagtct
cagctcaaactcagagaaggagagattgcacaactacagcttgagatctccagtctagag
agaagtcgttctgtgatggcggaagagctggtccgactcacaaatcaaaacgatgagatg
gaggagaaggtgaaggagatccccaagttgaaaattcagctcaaggacctggagcagagg
cacaacaccatcctgcagatgtatggagagaaggctgaagaagcagaagagctgaggcta
gacctagaagatgtgaagaacatgtacaagacccagatagatgaactgctgcagaaccag
aaataa
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