Larimichthys crocea (large yellow croaker): 104933262
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Entry
104933262 CDS
T04659
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03040
Spliceosome
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104933262 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104933262 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104933262 (prpf19)
04121 Ubiquitin system [BR:
lco04121
]
104933262 (prpf19)
03400 DNA repair and recombination proteins [BR:
lco03400
]
104933262 (prpf19)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104933262 (prpf19)
Spliceosome [BR:
lco03041
]
Complex B
Other components
Prp19 complex
104933262 (prpf19)
Complex C
Prp19-CDC5 complex
104933262 (prpf19)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
U-box type E3
104933262 (prpf19)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104933262 (prpf19)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_EML_2
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Prp19
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
DSE1_N
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_NOL10_N
Beta-prop_IFT140_1st
NBCH_WD40
CFAP251_N
Beta-prop_TEP1_C
ASA1
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_SPT8
PAC11
Beta-prop_HPS5
Beta-prop_Vps41
U-box
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Nup120_160
WD40_RFWD3
PROPPIN
Beta-prop_ACSF4
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
eIF2A
Alpha_humulene_synt
Tricorn_2nd
Cytochrom_D1
Ge1_WD40
zf-Nse
CCDC13
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
104933262
NCBI-ProteinID:
XP_010746969
LinkDB
All DBs
Position
I:complement(35810725..35815871)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAVPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTSKVLT
GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDNTIRVWSVTGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaggtgccggagcacccgtgcgtgtccccggtg
tccaaccaggtgtttgagcgccggctgatcgagaagtacatcgcagagaatgggacggac
ccgatgaacggacagcctctgtctgaggagcagctcgtagatatcaaagtgtcccatccc
attagaccaaaggcaccatccgcaacaagcattcctgctattctcaagtcccttcaagat
gagtgggatgctgttatgcttcacagtttcacgctgaggcagcagctgcagactactcgc
caagaactgtcgcatgcactctaccaacatgatgccgcctgcagagtcatcgctcgactc
accaaagaggtcactgctgcaagagaagctcttgccacactcaaacctcaagctggattg
gttgcccctcaggccgtccccgcctctcagccggctgcagcaggtgctggcggagagcct
atggagattagtgaacaggttggaatgaccccagagatcatccagaagctccaagacaaa
gctactatcctcaccacagaaagaaagaagagaggaaaaaccgtcccagaggagctggtt
agagctgaggatctcagcaaataccgccaagtggcctctcatgctggtcttcatagtgcc
agtgtccctggtattctggctctggatctgtgtccctcagacaccagcaaagttctcacc
ggtggagccgataagaacgtggtggtgtttgacaagaacgaggagcagattgtggcaaca
cttaagggccacaccaagaaggtcacctccgtcatttatcatccatcccagtctgtggtc
ttctctgcatctccagacaacaccatccgtgtgtggtctgtcaccgggggcaactgtgtc
caggtggtgcgtgcccacgaggcaggtgtgactggattgtccctacatgctactggggac
tacctgcttagttcatctgaggatcagtactgggccttttctgatatccagaccggtaga
gtcctcaccaaagtcactgatgaaagtgctggctgtgctctcacctgtgctcagttccac
cctgatggtctcatttttggcactgggacggctgattctcaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttcccaggccactctggccccgtcacctccattgct
ttctctgagaacggatactatctggccacaggtgcccaggatagctctctgaaactgtgg
gatttgaggaaactgaagaacttcaagaccatcaccctggacaacaactatgaggtgaag
tcccttgtgtttgatcagagtggtacctacctggctgtaggaggatctgacatccgtgtc
tacatctgcaagcagtggtctgaagtcctcaactttacagatcatacaggactggtgact
ggagtggcctttggagagaacgctcagttcctgacctctgcaggaatggacagaagtctg
aaattttatagtttgtag
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